XLOC_015583


Basic Information

Item Value
gene id XLOC_015583
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32854201 ~ 32862149 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031131
GTTGCATCATGTTTGCTGTGAGGTGCTTTTTGCATTCCGCTGTAGGACATTAGTTCCAGTAGAGGGCAGCATTTCTCCGTAATTCACCTGCTGTGCTTTTAACAAAGACGCCAAGTCTCTCTTCGCCTTCGGCTTTGTTGTTTCATTCGACATAGCTTTAAGTTCTTTGTATTAAGTTATACTTGTATTTAGCTCAAGTTTTACCTACTATCACGTGAAGCACGTTTAGGCTATGGAAAATAATTTAGCACAAGATGTAAACTGAGCTAATGTTATTGCTCACAACTCATATGTCGCTctgatcaaaaataaaaacatccagcCTGAGGTTAACAGGAGAAGTCGACCTTTTGgctttttgaaaatatatatttcttttaagcAGCAGGCATGTGCAATTGACAGCACACTGCATAATTAAAACGACTGTGAAAAGTCCTGAAATTGCCCTGAGAGTTAATGAAGTCGCACAGTGTGATGAGGGAAGATTGTGGTGGAAAGGGGTCAGCAGGCCTCTTCAGGCCTCTCGTCCATGGAAAATGGCTGCTGTCAGCCGTCGAACATTATGGGAATCTGAATGCCCACACAGTACACTCGAGCCGAGATTAATGACTTCAAATAGTGGCGTTTGGCAGAAGAGTTTCGTTTGCACTCTCAAAGGGACAAAAAACGTTGAGGAGGATGAAAACTTTGGATGTCTGGTGTCAGGAAACAGACACATCACATCAACCCATGTTTGTCCTTCCGTCTCCTTCACTCCCCCGCTTTTTTGGCACAGCGACCCGCGGTGCTTACTGTAAGCCTGCAGGGGCCATTCCGGCCCGCTGGCCTTTTCCTCCACACCTGTTTCAGAGGAGACATGTTGTGTTAGAGCTTCAAGTCCCTTCCACTAATGAGCAAAGCGTCCCACTGAAAGGAACATTGAGCGTCTGCCCCCCTCCCACTCGGGATGAAAGTGCGAGAGAGACATGACCAAAGTCGTCTCCGCTTTGACAAACATGAAAAGCTTCCCCGGCGTGTAACTTGAGGAATTGGACACTCAGAGAAGAGGGAAGGGCTTTCAGTCGGACTAGGCTTGCAACCGACCTCTCCAACCCCCCTTGCAAGTTTCCACTTATGAGAAAGAGGACAAATGAAGAAGAAAGAGGGAAGCAAGAGAAAGGGGCCCTCAGCGTGCGAACAGCACCTCTCGGGTTGCTCGAGATTGTTCAAAGTGACTGCGCTTCACAGAGCCCCTTCAAGAGAACATCTCCGGCTCTTCACAGCCATCGCATCTGACAAGCAGCGGGCTCCTGTTAAAAGCACTGTCGAATTAGatctacaaaacaaacccatGCTACACTAGAGGTGGACTTGGTTCGAGAGCACGCGTGTGCCTCAACGGCGCATAGTTTGAACGATTGAAAGTGTAAAAGTGCGACGACACTGGTCCCCGAGCACGCGTGGGGTGTGTTTAATTTGACTGATATAGGGCGCCGCAGACGGAAGTATGTCTAATGAAGGGGAGAGATGTACTCTTGTGTGACAGCCCTCCAGAAGCAAGGGCTCACAAAAAGCTCTACAGAGGCACAGAAACAAAGCAGCGAGCTTTTGATTCTGCTGTACAGCTGACACTTCAGCTTCTCTTGTTCTCCTAGCCAAAAGTCCCTTTGTTAAACATTCGGTGTTATAGGATTTTGAAAAGGTAAGAAATATAGAGTGGCCCTGAAAACTATACTTTACTGACATTTTCAAATGTATATGCATATTGTCATGTGTAACAATATGCAGAGGTAATTATTTGAAAGAAATATAGAGCACTGAATTGTGAAACTTTGTAGATACACAGCCCAAAATTCCGGCAAATGTATTTGAATCCTTGATTTTAGCTAATTGTTTTCTATATTCACAGGTCACATAtcaaatgtataatgtatataaaCTTACTAACCACTTTATTAGatgcaccttactagtaccgttttggatcctcttttgccttcagaactgccttaatcctttgtggcatagatttaacaaggtacttgaaatattcctcagagatttcggtccatattgacaagatagcatTACATAgttcctgcagatttgtcagctgcacatccatgatgtgaattttctgttccaccacatcccaactgtgctctattggatagggtctggtgactgtggaggccatttgagtacagtgaactcaatggGCCCAAGATGTGccaagaccccccc

Function

GO:

id name namespace
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:1990234 transferase complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031131 True 2226 lncRNA 0.45 2 32854201 32862149

Neighbor

gene id symbol gene type direction distance location
XLOC_015582 tmem53 coding upstream 3580 32846602 ~ 32850621 (+)
XLOC_015581 opn4.1 coding upstream 7877 32843133 ~ 32846324 (+)
XLOC_015580 pxdc1a coding upstream 15307 32835679 ~ 32838894 (+)
XLOC_015579 si:dkey-154p10.3 coding upstream 19760 32826235 ~ 32834441 (+)
XLOC_015578 ccr9a coding upstream 55118 32796873 ~ 32799083 (+)
XLOC_015584 NA coding downstream 4426 32866575 ~ 33029428 (+)
XLOC_015585 rnf220a coding downstream 189581 33051730 ~ 33216740 (+)
XLOC_015586 NA coding downstream 360813 33222962 ~ 33235257 (+)
XLOC_015587 klf17 coding downstream 464373 33326522 ~ 33328688 (+)
XLOC_015588 slc6a9 coding downstream 473762 33335911 ~ 33422798 (+)
XLOC_015576 BX323559.5 non-coding upstream 93869 32758663 ~ 32760332 (+)
XLOC_015574 BX323559.3 non-coding upstream 134227 32701820 ~ 32719974 (+)
XLOC_015573 NA non-coding upstream 206797 32644925 ~ 32647404 (+)
XLOC_015572 NA non-coding upstream 216696 32637080 ~ 32637505 (+)
XLOC_015571 BX323559.6 non-coding upstream 246174 32604847 ~ 32608027 (+)
XLOC_015590 NA non-coding downstream 604963 33467112 ~ 33468170 (+)
XLOC_015593 NA non-coding downstream 817924 33680073 ~ 33681136 (+)
XLOC_015600 BX649508.1 non-coding downstream 894229 33756378 ~ 33757568 (+)

Expression


Co-expression Network