XLOC_015586


Basic Information

Item Value
gene id XLOC_015586
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33222962 ~ 33235257 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033597
GGCCTGCAGGTGTGTTGTAATACAACATTGGTCGCACACGAGGGCGCTAAGCACCGCTAAACATTTTAGGAGAGAACTGCGGGTTGAAGGCAAAGACTTTTGTCCTCTGCTGACTGAAAAACTGGAGATTTCCATGTCAAGAAAAAGCTGTACCCACAATGCCACACCCACCTATGGCATCACCACCACAGACCAATGGGAGTTTAAAGACTGTTATCAGCTCTACTGGATAGACGATGATGTTTTGAGTCACTAAGCACCACTAGGGAAAGAGAAACCACCATGTCAGAATAGGACCAGTGGAAACTATACTTCCCAAAGGTCCTTTATGTCACCTGTTGAATACTGGGATTGCGAGGCATTGTGCGGTGATTTACACAGATCTTTCTGTCAGGAGAACAGGCTTTGTGGCAGACAATGCCTTTTGTTGGCGGGCACAAAGAAGAGGTTTCAAACATCTATTCATGTCTCCACTGTGATTATGGCACATGGATGTATAATTTCATCAGAGAGGAACAGGCTGAACAAAATGTCTGCCATGCCATCCATCTAGCAATAGAATGAACATATCTGTAAAATTCAGCATCCCTTTGggttcttaaaggaacactccac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033597 True 615 lncRNA 0.45 5 33222962 33235257

Neighbor

gene id symbol gene type direction distance location
XLOC_015585 rnf220a coding upstream 6222 33051730 ~ 33216740 (+)
XLOC_015584 NA coding upstream 193534 32866575 ~ 33029428 (+)
XLOC_015583 NA coding upstream 360813 32854201 ~ 32862149 (+)
XLOC_015582 tmem53 coding upstream 372341 32846602 ~ 32850621 (+)
XLOC_015581 opn4.1 coding upstream 376638 32843133 ~ 32846324 (+)
XLOC_015587 klf17 coding downstream 91265 33326522 ~ 33328688 (+)
XLOC_015588 slc6a9 coding downstream 100654 33335911 ~ 33422798 (+)
XLOC_015589 zgc:113531 coding downstream 222053 33457310 ~ 33466371 (+)
XLOC_015590 NA coding downstream 231855 33467112 ~ 33468170 (+)
XLOC_015591 BX548164.2 coding downstream 306671 33541928 ~ 33543046 (+)
XLOC_015576 BX323559.5 non-coding upstream 462630 32758663 ~ 32760332 (+)
XLOC_015574 BX323559.3 non-coding upstream 502988 32701820 ~ 32719974 (+)
XLOC_015573 NA non-coding upstream 575558 32644925 ~ 32647404 (+)
XLOC_015593 NA non-coding downstream 444816 33680073 ~ 33681136 (+)
XLOC_015600 BX649508.1 non-coding downstream 521121 33756378 ~ 33757568 (+)
XLOC_015601 NA non-coding downstream 524360 33759617 ~ 33771872 (+)
XLOC_015603 NA non-coding downstream 662213 33897470 ~ 33898732 (+)

Expression


Co-expression Network