XLOC_015590


Basic Information

Item Value
gene id XLOC_015590
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33467112 ~ 33468170 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033598
tttagtcacattattgaagtgcagtacagacatgtaaacaccgcaatcaaactattaccgtcgtgtaggatttttgccagATGACAGGAAAGATTTGATAGGTTTTTTTCCAGATGACAGGATAGATTTGATGgatttgtgacaggatagtcgatacacacacggctgtttgacactaatCTCGGcgcctaccgagtcagtgaaggaccacagacacctacaACGTGAAATGCGTAGGGTTTTGTAAAACATGTAAAACGAGATCATAAaatgaacattcaaaaagcaattcATGTGaaaccttaatcatattatcgttttattcagattaaggcaaattactgatgtccatgtaaaggtaGTCAATCACTTTCTTTGAAACTTAGTAAAAAATTTTTCAAAGatgaacattttactcaaacccatacctAAGCACATTTAGAGAAAAGTCTCTTAATTGTATCAATAGCTGCATCATATAAGCATTATACAACTAAAAACTTTCTATTGTTATTCTTCTTATGTTAACTAACCATTTAGAATTCCATTTTCAATGTAAAACAAGTGCTTAAAATATTATGTTGACTCTCTAAGGGCTATTCCCTAATGGAACCAATCATAGAGCTTAGTTTTGAGACACCTTTTTGGCACGGTTGAAAAAAAAGCACAATGAACATATTACTTTTTATATGCCTTTTAATATCTATGTTGTATAAAATGTTGACGTTGTTTTGAAGTTGTTTTCAGtggtattttaaatgatttaaagcaGCATGTGTATTATTTCCTGCTTCAAAAGCTCAAAAACCAAAGTATGTTAAGACTGCGAGACTTGCATTACTGCCATGCAGGCATGGAAATAGCTAATGTAGCATGAAATACAGCCAAACAAGCCCGACATAAATAAATCATGCATAAATAACGCAggcttgtttttgctttatttctgtTCCGACACCTCATTTTAAAAGCTGTGGTAATGTTACTTTTTTCCCCAAGAACTATTTGCAATTATGACACAGAatgtacacaaatataaataaaccacaagTGATCTAC

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0001501 skeletal system development biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0050840 extracellular matrix binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033598 True 1059 lncRNA 0.34 1 33467112 33468170

Neighbor

gene id symbol gene type direction distance location
XLOC_015589 zgc:113531 coding upstream 741 33457310 ~ 33466371 (+)
XLOC_015588 slc6a9 coding upstream 44314 33335911 ~ 33422798 (+)
XLOC_015587 klf17 coding upstream 138424 33326522 ~ 33328688 (+)
XLOC_015586 NA coding upstream 231855 33222962 ~ 33235257 (+)
XLOC_015585 rnf220a coding upstream 250372 33051730 ~ 33216740 (+)
XLOC_015591 BX548164.2 coding downstream 73758 33541928 ~ 33543046 (+)
XLOC_015592 BX649508.2 coding downstream 196217 33664387 ~ 33698458 (+)
XLOC_015593 NA coding downstream 211903 33680073 ~ 33681136 (+)
XLOC_015594 si:dkey-31m5.2 coding downstream 223995 33692165 ~ 33695754 (+)
XLOC_015595 si:dkey-31m5.3 coding downstream 229170 33697340 ~ 33699311 (+)
XLOC_015584 NA non-coding upstream 437684 32866575 ~ 33029428 (+)
XLOC_015583 NA non-coding upstream 604963 32854201 ~ 32862149 (+)
XLOC_015576 BX323559.5 non-coding upstream 706780 32758663 ~ 32760332 (+)
XLOC_015574 BX323559.3 non-coding upstream 747138 32701820 ~ 32719974 (+)
XLOC_015600 BX649508.1 non-coding downstream 288208 33756378 ~ 33757568 (+)
XLOC_015601 NA non-coding downstream 291447 33759617 ~ 33771872 (+)
XLOC_015603 NA non-coding downstream 429300 33897470 ~ 33898732 (+)
XLOC_015604 NA non-coding downstream 431382 33899552 ~ 33908702 (+)

Expression


Co-expression Network