XLOC_015593


Basic Information

Item Value
gene id XLOC_015593
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33680073 ~ 33681136 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033599
ACTTTCACGTTTCTTTTAATTTCTCCAAGGACAATTATATGAATTCTAGAGGATCCACTTGTACACATCAAAACAATGGAATCACCACATTAACATATTCAACAATCACTGAAACAAGAAATGCTTACAAGGTCATCTTTACCACATGACTTTTGGAATAATGAGACTCAAAGTAGCCTCTCAGTGTAATCCATCATTACAACCAGGTCCAAGTTGGAATGTTTCAAAAGAAACACTTAAGCacgtaaagaaaaaaatatatattaataattcacTCCACAGACCCAGTGCAAGACTAATGGACCATCTGGAAACGATTCACAAGACTAGTGCTTTACATATTGGGTTTGTAAGTTGACTGATCATTTTAACTTAAAGACAGACATTTAACAGTTGATTTTGGACATTCAGTGGTTAGTAAAGTCATGTTTAGTATGTAGCTCCACTTCACAAACACAtcagaaatagaaataaaaatagaatttcAGTTGATTTAAGAAAAGGTCAACTGATCTTGCGAGTTTGATCATAGTCATCATAACCAGTGGTTCAAACGGAGCACTGTCAGGTTTGCTAGATAACCTACAGACTGCAGCGAAGGAAAAACACTATTTAATTGTACATGAATGAAAATGAGGCTGTGGGTTGTACTGTTAAGCATTTCAGCCACTGCAAAAATTGGCAATGTCTTTCTaaacttgtttatattatttttgaggTTGAGAAAGAACCATACAGCCTCGTTGAAATTTGCAAACACAAAAATTAAGTATAGCATTAAATATCTGTGTCTATCAGGATGCTGAAAACTGACGACTTCAAAACTGACAAGCCTAACTTACCACCGGTTCCTTTGAGATTTTCCTATATATCAGGGGTgcctaaactcagtcctggagggctgatTTTGCACAGCCCTGctttacatatttgtaatttataaattaaataagatcC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033599 True 957 lncRNA 0.35 2 33680073 33681136

Neighbor

gene id symbol gene type direction distance location
XLOC_015591 BX548164.2 coding upstream 137027 33541928 ~ 33543046 (+)
XLOC_015590 NA coding upstream 211903 33467112 ~ 33468170 (+)
XLOC_015589 zgc:113531 coding upstream 213702 33457310 ~ 33466371 (+)
XLOC_015588 slc6a9 coding upstream 257275 33335911 ~ 33422798 (+)
XLOC_015587 klf17 coding upstream 351385 33326522 ~ 33328688 (+)
XLOC_015594 si:dkey-31m5.2 coding downstream 11029 33692165 ~ 33695754 (+)
XLOC_015595 si:dkey-31m5.3 coding downstream 16204 33697340 ~ 33699311 (+)
XLOC_015596 si:dkey-31m5.5 coding downstream 41411 33722547 ~ 33725328 (+)
XLOC_015597 si:dkey-31m5.5 coding downstream 45726 33726862 ~ 33728796 (+)
XLOC_015598 si:dkey-31m5.5 coding downstream 66373 33747509 ~ 33750290 (+)
XLOC_015586 NA non-coding upstream 444816 33222962 ~ 33235257 (+)
XLOC_015584 NA non-coding upstream 650645 32866575 ~ 33029428 (+)
XLOC_015583 NA non-coding upstream 817924 32854201 ~ 32862149 (+)
XLOC_015576 BX323559.5 non-coding upstream 919741 32758663 ~ 32760332 (+)
XLOC_015600 BX649508.1 non-coding downstream 75242 33756378 ~ 33757568 (+)
XLOC_015601 NA non-coding downstream 78481 33759617 ~ 33771872 (+)
XLOC_015603 NA non-coding downstream 216334 33897470 ~ 33898732 (+)
XLOC_015604 NA non-coding downstream 218416 33899552 ~ 33908702 (+)
XLOC_015605 dre-mir-23a-3 non-coding downstream 219299 33900435 ~ 33900512 (+)

Expression


Co-expression Network