Fish Transcriptome and Expression Database

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model fish

XLOC_015642 (traj4)

Basic Information

Item	Value
gene id	XLOC_015642
gene name	traj4
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	36097414 ~ 36097469 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031215
TGTCTGGTAGTGGAGCCGCAGGGAAGATTATTTTTGGAAAAGGAGTGAAACTCACA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000099869

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00031215	True	56	TR_J_gene	0.45	1	36097414	36097469

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_015641	traj3	coding	upstream	627	36096728 ~ 36096787 (+)
XLOC_015640	si:dkey-161l11.75	coding	upstream	985	36096367 ~ 36096429 (+)
XLOC_015639	traj2	coding	upstream	1447	36095905 ~ 36095967 (+)
XLOC_015638	si:dkey-161l11.74	coding	upstream	1949	36095406 ~ 36095465 (+)
XLOC_015637	si:dkey-161l11.67	coding	upstream	2358	36094994 ~ 36095056 (+)
XLOC_015643	traj5	coding	downstream	515	36097984 ~ 36098047 (+)
XLOC_015644	si:dkey-161l11.62	coding	downstream	872	36098341 ~ 36098397 (+)
XLOC_015645	traj6	coding	downstream	1281	36098750 ~ 36098812 (+)
XLOC_015646	BX681417.3	coding	downstream	1500	36098969 ~ 36099028 (+)
XLOC_015647	BX681417.8	coding	downstream	1741	36099210 ~ 36099272 (+)
XLOC_015636	BX681417.2	non-coding	upstream	3095	36092953 ~ 36094319 (+)
XLOC_015626	BX571812.1	non-coding	upstream	265969	35831329 ~ 35831445 (+)
XLOC_015623	NA	non-coding	upstream	483116	35612555 ~ 35614298 (+)
XLOC_015619	FP236741.1	non-coding	upstream	516123	35512002 ~ 35581291 (+)
XLOC_015618	NA	non-coding	upstream	594481	35482156 ~ 35502933 (+)
XLOC_015685	BX681417.1	non-coding	downstream	19925	36117394 ~ 36117456 (+)
XLOC_015702	NA	non-coding	downstream	82774	36180243 ~ 36583275 (+)
XLOC_015703	NA	non-coding	downstream	147453	36244922 ~ 36247469 (+)
XLOC_015704	NA	non-coding	downstream	281770	36379239 ~ 36471110 (+)

Expression

Co-expression Network