Fish Transcriptome and Expression Database

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model fish

XLOC_015648 (si:dkey-161l11.76)

Basic Information

Item	Value
gene id	XLOC_015648
gene name	si:dkey-161l11.76
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	36099905 ~ 36099964 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031221
TGACTGATGGATATGGAAAAGTGATCTTTGCTTCTGGTTCAAAACTACACATTAGTACAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000099394

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00031221	True	60	TR_J_gene	0.35	1	36099905	36099964

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_015647	BX681417.8	coding	upstream	633	36099210 ~ 36099272 (+)
XLOC_015646	BX681417.3	coding	upstream	877	36098969 ~ 36099028 (+)
XLOC_015645	traj6	coding	upstream	1093	36098750 ~ 36098812 (+)
XLOC_015644	si:dkey-161l11.62	coding	upstream	1508	36098341 ~ 36098397 (+)
XLOC_015643	traj5	coding	upstream	1858	36097984 ~ 36098047 (+)
XLOC_015649	traj7	coding	downstream	243	36100207 ~ 36100269 (+)
XLOC_015650	BX681417.17	coding	downstream	501	36100465 ~ 36100527 (+)
XLOC_015651	BX681417.16	coding	downstream	1413	36101377 ~ 36101442 (+)
XLOC_015652	BX681417.10	coding	downstream	1798	36101762 ~ 36101824 (+)
XLOC_015653	traj11	coding	downstream	2097	36102061 ~ 36102123 (+)
XLOC_015636	BX681417.2	non-coding	upstream	5586	36092953 ~ 36094319 (+)
XLOC_015626	BX571812.1	non-coding	upstream	268460	35831329 ~ 35831445 (+)
XLOC_015623	NA	non-coding	upstream	485607	35612555 ~ 35614298 (+)
XLOC_015619	FP236741.1	non-coding	upstream	518614	35512002 ~ 35581291 (+)
XLOC_015685	BX681417.1	non-coding	downstream	17430	36117394 ~ 36117456 (+)
XLOC_015702	NA	non-coding	downstream	80279	36180243 ~ 36583275 (+)
XLOC_015703	NA	non-coding	downstream	144958	36244922 ~ 36247469 (+)
XLOC_015704	NA	non-coding	downstream	279275	36379239 ~ 36471110 (+)
XLOC_015705	NA	non-coding	downstream	452728	36552692 ~ 36564473 (+)

Expression

Co-expression Network