Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_015688 (BX681417.21)

Basic Information

Item	Value
gene id	XLOC_015688
gene name	BX681417.21
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	36118397 ~ 36118462 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031268
TGAATGCTGGAAGTTCATATGGAAAGCTCATCTTTGGGTCCGGCACAAAATTAGAAGTACACACAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000115774

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00031268	True	66	TR_J_gene	0.41	1	36118397	36118462

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_015687	traj47	coding	upstream	386	36117949 ~ 36118011 (+)
XLOC_015686	traj46	coding	upstream	678	36117657 ~ 36117719 (+)
XLOC_015685	BX681417.1	coding	upstream	941	36117394 ~ 36117456 (+)
XLOC_015684	traj45	coding	upstream	1334	36117004 ~ 36117063 (+)
XLOC_015683	traj44	coding	upstream	1791	36116544 ~ 36116606 (+)
XLOC_015689	si:dkey-161l11.78	coding	downstream	333	36118795 ~ 36118857 (+)
XLOC_015690	BX681417.18	coding	downstream	661	36119123 ~ 36119188 (+)
XLOC_015691	traj10	coding	downstream	1080	36119542 ~ 36119604 (+)
XLOC_015692	si:dkey-161l11.79	coding	downstream	1801	36120263 ~ 36120325 (+)
XLOC_015693	traj51	coding	downstream	2158	36120620 ~ 36120676 (+)
XLOC_015646	BX681417.3	non-coding	upstream	19369	36098969 ~ 36099028 (+)
XLOC_015636	BX681417.2	non-coding	upstream	24078	36092953 ~ 36094319 (+)
XLOC_015626	BX571812.1	non-coding	upstream	286952	35831329 ~ 35831445 (+)
XLOC_015623	NA	non-coding	upstream	504099	35612555 ~ 35614298 (+)
XLOC_015702	NA	non-coding	downstream	61781	36180243 ~ 36583275 (+)
XLOC_015703	NA	non-coding	downstream	126460	36244922 ~ 36247469 (+)
XLOC_015704	NA	non-coding	downstream	260777	36379239 ~ 36471110 (+)
XLOC_015705	NA	non-coding	downstream	434230	36552692 ~ 36564473 (+)
XLOC_015707	NA	non-coding	downstream	520469	36638931 ~ 36642762 (+)

Expression

Co-expression Network