XLOC_015704


Basic Information

Item Value
gene id XLOC_015704
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36379239 ~ 36471110 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033279
CAGCCATTGCACATGTTTATTTACAGGCAGGATTGTGCAGTGGGTAAAGGGTGAGTGGGATATTATGGGGAGGGACGATGATCAGCATCAGCACCATCTGTTGTTGTGGTTGTGTTTGTTGATCCACAGGTGCTTCAGTTTAGGATCATTTCTGTAACGCTGGTGTGCAGcagctctctttctctcctctccCTCTCCTTCTGGAGATTCCTCTCCACATTCCCTTCACCTTCTCCTCTGCCCTGGTGAACAGATTCATCTGCACTTTTCTTTTGGTCTTTGGCTGCTCCGGGACGTTTTCACTGAGCTTGCTCTCAGCCCCATCAGCAGGAGACACGCAGAACAGAGAGGTCATATCATGTTCAGCCTCAGAGTGTCCAGCTTCACTGAGGTCCTCAAAC
>TCONS_00033280
TGGGGAGGGACGATGATCAGCATCAGCACCATCTGTTGTTGTGGTTGTGTTTGTTGATCCACAGGTGCTTCAGTTTAGGATCATTTCTGTAACGCTGGTGTGCAGcagctctctttctctcctctccCTCTCCTTCTGGAGATTCCTCTCCACATTCCCTTCACCTTCCTCTCTGCCCAGGTGAACAGATTCATCTGCACTTTTCTTTTGGTCTTTGGCTGCTCCGGGACGTTTTCACTGAGCTTGCTCTCAGCCCCATCAGCAGGAGACACGCAGAACAGAGAGGTCATATCATGTTCAGCCTCAGAGTGTCCAGCTTCACTGAGGTCCTCAAACTCAAACACTTCACTCGTCCATGATTCATCATCCagcacctcctcctcctcctcctcctctttccaGGCAATCATCTGTCTTTGGGATCTTTCAGGCTCCAGGAAGGTCTGGATGGTCTCCCCAAACTCGCTTTCCTCATCCTCAGTATCTGAAAACATGAGCTCTGAAGCAGATACAGACCAGGCAGAACCTGAAGACTGAGACTGCAGTGAGCTGAGAGAACACACTGATCTCAGAGGAGCACGAGGAGGAGGAATAGGACACACTGTGAGGAACAGCTTATCTGGTGCAGGAACAGGACGTGGATAAACAGCCAGCTGTTTAGGAGGATGCACTTGAATAGGACACCCAGGAAAGACAAACTCATGCTCAGGTCCTCCCACAGGAATGGGTCTCAGAGGACTCACTGAGGAGGATTGGTGAGAGAACAGCTCATCTGGTGCAGGAACAGGACGTGGAGGAACAGCCAGCAGTTTGGGAGGGTCCATATTAAAAGGACACCCAGGCAGGACAAACTCTTGCTCAGATCCTTCCACAGCACACATCTGTGGTCTTTTCACTGGCGGCAGGGGCTTGAATCGAGCGGCTGGAAGGATGAAGTCTCCGGAGTCACTGGGAAGCTTTGGGGGTTTTCTCTTTATGGGCTTTAAGACAGAGGGTCTGGCAGGAGTCTGCAGGGCTTTGACCTCTCTTTTAGCCCCCTTGCGGCGTTTCTTCCTGCACTTGTTGGGATTAGCAGTGAAGTTGCAGGCCTCGCTCTCTGAACATTTATTTACTGCCGCCAGTTCTTGAGCTGCACATTGCTGTGTCTCCCTTCGATGCCAGAAAGGGATAAAACAGTCAAACAGCTTTTTAAATGCACTGCTGAACAGAGCCATCCTGAACACTGAAGGCTGAAAATGAGTTGGTCAGTAAGTCACAGAAGTAGCTCTCAATCACTCGACCACTCAAACACCAACAACAGTTTAGAATGTGAACTGCAGTTTCTGTATTCCAGAACAGAATTCTGTTTATGACATCACACATTCTGCTGAGCTCCTCTGAGTGACACTTCTGAACTATGACTATAGAATATGATATATTGAgtaatatgttatattatttatattttatttgattattatatatatatatcatatataataattataatataattttgtattatatatgtatgttacttttttatgtaaactttataaatgc

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009058 biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0005764 lysosome cellular_component
GO:0000323 lytic vacuole cellular_component
GO:0005615 extracellular space cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033279 False 401 lncRNA 0.50 2 36379239 36425187
TCONS_00033280 True 1542 lncRNA 0.46 2 36424854 36471110

Neighbor

gene id symbol gene type direction distance location
XLOC_015703 NA coding upstream 131770 36244922 ~ 36247469 (+)
XLOC_015656 CT867973.1 coding upstream 221326 36103309 ~ 36157913 (+)
XLOC_015701 traj60 coding upstream 254422 36124755 ~ 36124817 (+)
XLOC_015700 traj59 coding upstream 254957 36124223 ~ 36124282 (+)
XLOC_015699 traj58 coding upstream 255308 36123871 ~ 36123931 (+)
XLOC_015705 NA coding downstream 81582 36552692 ~ 36564473 (+)
XLOC_015706 ing5b coding downstream 134909 36606019 ~ 36636866 (+)
XLOC_015707 NA coding downstream 167821 36638931 ~ 36642762 (+)
XLOC_015708 klhl6 coding downstream 175341 36646451 ~ 36659156 (+)
XLOC_015709 ptx3b coding downstream 220661 36691771 ~ 36695144 (+)
XLOC_015685 BX681417.1 non-coding upstream 261783 36117394 ~ 36117456 (+)
XLOC_015646 BX681417.3 non-coding upstream 280211 36098969 ~ 36099028 (+)
XLOC_015636 BX681417.2 non-coding upstream 284920 36092953 ~ 36094319 (+)
XLOC_015626 BX571812.1 non-coding upstream 547794 35831329 ~ 35831445 (+)
XLOC_015712 NA non-coding downstream 271233 36742343 ~ 36743912 (+)
XLOC_015713 dre-mir-2198 non-coding downstream 282539 36753649 ~ 36753758 (+)
XLOC_015725 NA non-coding downstream 830298 37301408 ~ 37307571 (+)

Expression


Co-expression Network