XLOC_015707


Basic Information

Item Value
gene id XLOC_015707
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36638931 ~ 36642762 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033612
TGTTTATATAGTTTATACGTATGTTTATATATTGTCTTTCTTTGTTTAGGTTCAACAATTTCCAGCAGCTGAGTGGTTAAGTGATTCACCTCCCATCCCAGTGACCCAGGTTCTCTCCCACACCCTGACAATAGTCTCTGTGTAGAACGgatcatgtgtgcatatatatggagtgtgtgtatagaatgtataatgtatgtatggagtttattgtgtatgtgtatagatAGTATCATGTGTGTACATATGTAGAGATTGTCATGTCTGTGTGTATGAATAgagtgtatatgtacagtattcATAGTGTGTAGGGACTGTTTCATGTTTCCATAAGTATTGAGTGTATGTGTATAGTgtttcatgtgtgcatatgtatggagtgtatcatgtttgtatatgtatggtACCatgagtgtatttatttatatgtatggattgtatcGTATAGAATTTATCGTGTGTGCATATGCTCAAGATACACTTTATATTTACGCCAAatgatacattctatcaTTCACACACGAG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033612 True 525 lncRNA 0.35 2 36638931 36642762

Neighbor

gene id symbol gene type direction distance location
XLOC_015706 ing5b coding upstream 2065 36606019 ~ 36636866 (+)
XLOC_015702 NA coding upstream 55656 36180243 ~ 36583275 (+)
XLOC_015705 NA coding upstream 74458 36552692 ~ 36564473 (+)
XLOC_015704 NA coding upstream 167821 36379239 ~ 36471110 (+)
XLOC_015703 NA coding upstream 391462 36244922 ~ 36247469 (+)
XLOC_015708 klhl6 coding downstream 3689 36646451 ~ 36659156 (+)
XLOC_015709 ptx3b coding downstream 49009 36691771 ~ 36695144 (+)
XLOC_015710 golim4b coding downstream 58560 36701322 ~ 36721289 (+)
XLOC_015711 pdcd10b coding downstream 78595 36721357 ~ 36731963 (+)
XLOC_015712 NA coding downstream 99581 36742343 ~ 36743912 (+)
XLOC_015685 BX681417.1 non-coding upstream 521475 36117394 ~ 36117456 (+)
XLOC_015713 dre-mir-2198 non-coding downstream 110887 36753649 ~ 36753758 (+)
XLOC_015725 NA non-coding downstream 658646 37301408 ~ 37307571 (+)
XLOC_015733 NA non-coding downstream 1183972 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 non-coding downstream 1193857 37836619 ~ 37846849 (+)

Expression


Co-expression Network