XLOC_015708 (klhl6)


Basic Information

Item Value
gene id XLOC_015708
gene name klhl6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36646451 ~ 36659156 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031289
CTGTAGTTTCACCAAGGTCCTAAAATCACATGGTGTTCCACTTTATTCAGAGGAAACATCTCTGCCTCTGGAACTCCAGATAATGGCTGACGCTCCACAGAATGACTCTGAATGTCCCTCATCTGGCCAGACCGAAGCTTCAGCTGGAGGTCTGAGTTTGCTGGAGAGCTCGACGCAGGAGAACCAAGAAGATGGCCAGGTTTTGTTTGAGGATTCTGTGTTTGCTGGTTGTTTGCAGGATGGACTGCACAGTCTGTGTCTGGAGGACAGCTTGACAGATGTGATTCTCAATGTACAGAGTCAGAGCTTCAAGTGCCATCGAGTGGTCCTCGCTGCAGCCAGTCATTATTTCAGAGCAATGTTTTGTAATGACCTAAGAGAAAAGCATGaagaaaatgttaatattaaaggCATTGATGCTGACACTATGAGAATCCTGTTAGATTACACTTACACCAGCAAAGTCACCATCACCAAAGACAATGTTCAGAGAATGCTTGAGGCCGCCTGCCTTTTTCAGTTTCCTCGTATTGTGGACGCTTGTGCAAGTTATCTCGCGGAAGCCCTTCATCCAGAGAACTGTGTGGGGATCCTGCATCTGGCCGACGTTCACTCACTAGAGTCTCTAAAGACACAGGTTCACTCCTACATTGTCCAGAACTTCTCCCAGGTGGTGGATCATGAAGAGATCCTGGAGCTTCCCGCAGACGTGTTGGTCAGTCTGATCCAGCATGATGATTTGGGGGTTACAGAGGAAGAGCAGGTGTTTGATACGGTTATCCGCTGGGTGAAGGCCCGAGAGGATGACAGGACAGCTCTGCTGCCTCGCGTACTCACACATGTGCGGCTGCCCTTGCTGGACCCGTGGTTCTTCGTGGAGCGGGTGGAGGGAGACCCATTGATCCGCCATTGTGCAGAGGTTTTCCCACTGCTGCAGGAGGCCAGAGTTTATCACCTCTCAGGAAAAGAGGTGATCTCTGAGCGCACCAAACCGAGAGTGCAGGAGTTTCAGTCGGAGGTCTTTATGATCATCGGAGGATGTACAAAGGAAGAGAAGTTTGTATCAGAGGTCACCTGTCTGGACCCGCTACGCAGGAGCCGCTTAGAGGTTGCAAAACTGCCAAACACTGAGATGGAGACTGAGAGTGAAAACAAGAagtgggtggagtttgcatgtgtcaCATTCAGAAACGAAGTGTACATCTCAGGTGGCAAGGAAACTCTGCATGATGTGTGGAAGTATAATGCATCACTGAACAAATGGATCCAGATTGAGTTCCTCAACACAGGCCGCTGGAGACACAAGATGGCAGTTGCTGGTGGAAAGGTGTATGTTTTGGGTGGCTTTGATGGAACCCAGAGATTGAATTGCGTTGAAGCCTATGATCCTTTTCACAACTGCTGGTCAGAGGCAGCGCCGCTTATGTTGAGTGTGAGCTCTTTCTCTGCTGCCAGCTTTGACAGATGCATCTACGTGATTGGTGGAGGTCCTAATGGCAAGCTGGCCACAAACAACATGCAGTGCTTCGACTCACAATCAAATAAATGGAGCCTTAAGTGTCCGATGCCAACTGAGGCCAAATGCACAAATGCAGTGACCTTTAAGGATGCCATTTTTGTTGTTGGTGGAGCGATGAAGGCTTTGTATTCCTACAGTCCTCTGGTAGACTCGTGGACGCTGATAATCCAGCTGGGCTGTGAGAGAGCCAGCTGTGGCATTGCTGCGTGCAACAACAAGCTCTTCATTACTGGAGGCCGCGATGACAAGAATGAGGTGATCGCGACAGTTCTCTGCTGGAACCCGGACACAAAGAAGTTAACAGAGGAGTGTGTGCTTCCACGTGGAGTCTCTCATCATGGCAGTGTGACTATCAGGAAGTCCTACACGCATATACGCAGGATAACACCTGGAACTGCCACTGGATGACAGATATATCAGCTGGAGAGTGCAGTTTTACAGTTTGTATAGTGGAGGCTTTGTTGTTTAGCCTCCTTCTTAGAGCGCCTGCCTCTGTGTGGAACTGAAAAGGTTACATTGGGCTCTACTAAC
>TCONS_00031290
AGAGGAAACATCTCTGCCTCTGGAACTCCAGATAATGGCTGACGCTCCACAGAATGACTCTGAATGTCCCTCATCTGGCCAGACCGAAGCTTCAGCTGGAGGTCTGAGTTTGCTGGAGAGCTCGACGCAGGAGAACCAAGAAGATGGCCAGGTTTTGTTTGAGGATTCTGTGTTTGCTGGTTGTTTGCAGGATGGACTGCACAGTCTGTGTCTGGAGGACAGCTTGACAGATGTGATTCTCAATGTACAGAGTCAGAGCTTCAAGTGCCATCGAGTGGTCCTCGCTGCAGCCAGTCATTATTTCAGAGCAATGTTTTGTAATGACCTAAGAGAAAAGCATGaagaaaatgttaatattaaaggCATTGATGCTGACACTATGAGAATCCTGTTAGATTACACTTACACCAGCAAAGTCACCATCACCAAAGACAATGTTCAGAGAATGCTTGAGGCCGCCTGCCTTTTTCAGGTTTGTATTGTTGTACAGGTTTTGCACACCTTCATGTTTAAGTAATTCCCATCTGAACCATATTATCATTTTAATGGCATTAACAGTATGTATAGCATGATGGAATAGTCAACACATATAATCTGACtaaaatttctgtttgtttgccagccgttatttaaatttgtattttatgttttgtacaTTAAAACCACTAGGAAAGTACCAAGCACAACAGGGAAGTGAAAATTAGCATTGTTTACAAAAAGATATACACATTTTTCCAATTGACTCTCCTTAGTCACATCTGGGTAACTGACTGGGGTGAAATGTTTACTAAAAAAGTTGAGGTgacttatgtttatatttttatgaaCATAATTGCAATGAAATGTCTGTCAAATCATGTTCAAATATGAATTtagtaagtttttattttaaaacaaagccctttaaaaa

Function

symbol description
klhl6 Predicted to act upstream of or within B cell receptor signaling pathway and germinal center formation. Orthologous to human KLHL6 (kelch like family member 6).

GO:

id name namespace
GO:0002467 germinal center formation biological_process
GO:0050853 B cell receptor signaling pathway biological_process

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030616-325 Predicted to act upstream of or within B cell receptor signaling pathway and germinal center formation. Orthologous to human KLHL6 (kelch like family member 6).

Ensembl:

ensembl_id ENSDARG00000026990

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031289 False 2050 mRNA 0.49 7 36646451 36659156
TCONS_00031290 True 910 lncRNA 0.38 2 36646499 36647551

Neighbor

gene id symbol gene type direction distance location
XLOC_015707 NA coding upstream 3689 36638931 ~ 36642762 (+)
XLOC_015706 ing5b coding upstream 9585 36606019 ~ 36636866 (+)
XLOC_015702 NA coding upstream 63176 36180243 ~ 36583275 (+)
XLOC_015709 ptx3b coding downstream 32615 36691771 ~ 36695144 (+)
XLOC_015710 golim4b coding downstream 42166 36701322 ~ 36721289 (+)
XLOC_015711 pdcd10b coding downstream 62201 36721357 ~ 36731963 (+)
XLOC_015712 NA coding downstream 83187 36742343 ~ 36743912 (+)
XLOC_015713 dre-mir-2198 coding downstream 94493 36753649 ~ 36753758 (+)
XLOC_015705 NA non-coding upstream 81978 36552692 ~ 36564473 (+)
XLOC_015704 NA non-coding upstream 175341 36379239 ~ 36471110 (+)
XLOC_015703 NA non-coding upstream 398982 36244922 ~ 36247469 (+)
XLOC_015725 NA non-coding downstream 642252 37301408 ~ 37307571 (+)
XLOC_015733 NA non-coding downstream 1167578 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 non-coding downstream 1177463 37836619 ~ 37846849 (+)

Expression


Co-expression Network