XLOC_015717 (gadd45bb)


Basic Information

Item Value
gene id XLOC_015717
gene name gadd45bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36939749 ~ 36941988 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031300
aaattattgCAAGATTTCACTGCGGCTATTCTCACCTTGATCATTCCTAACAGAAAACAACTGTCTTTGACACAAAACATGAGACTCCATCCATAGAAACCTGCTTGGCATGAGGTTTCGTCTCGGCTGCAGTTTCAACCACGCCCACTACGCTGATCCTGTTATAAAACACCGGCGTCCACAGCTCGAGTCAAACACGAGTCGAGACAGTGTCGCTGCAAGAGGTATCTACGAGagagagaaaacccacacgaaacCTCTGTGGATTACTACTGCCACACAACATCGACTTATTCTGTGGAATTATACCTACTATTTGGTGGAATTTCCAGTTGTGGATTATAAACACTTTACGGATAAACATGACTCTGGAGGAAGTTGTTGGATGCAACAGCACTGAGAGAAAaaTGGAGACAGTGAGTGAAGCTCTGGAGGAGCTGCTGATGGCTGCACAGCGACAAAACTGTCTGACAGTTGGAGTCTACGAGTCTGCACAACTCATGAATGTGGATCCAGACAGCGTGGTGCTGTGCGTTCTAGCCACCGATGAGGAGGACGAGAATGATGTTGCGCTTCAGATCCACTTCACGCTCATCCAAGCCTTCTGCTGCGACATCGACATCAACATTGTGCGCGTGTCCGGCATGAGGCGTCTGGCACAGGTTCTCGAAGAGCCTCTGTCCACTGACAATAACGCCAATGAACCAAGAGACCTTCACTGCATACTTGTTACTAACCCCCAAGCCGAGCATCTCAAGCTGAAGGAAGTGGGAAGTTACTGCAAGGAAAGCCGCTGCAGGAACCAGTGGGTGCCTTCTATTGCCCTGCAAGAGCGCTGAAGTGTCGTGCACTGAAATGTGCTGaagagaaatggaatattgatGTTGTCCTTCACCTGTGAGGACATGCTCATCAATTCAAGAGGACTGTCCAATAGTCCTTTCTGGAGCTTCTGCCTCCATGTTTATGGAATTCTAAGTGTCAGAGGAAACAAGAGACATTTGTCCACGTTCCTCATAATGCATGATCGGTGTTATCGCTCCTCTGGACAGACCAAAGGAGCATCTGGGTGGTCGGTGGACTGTGTCGTAGCTCTGAAAGGATGCAGCAAGGAATCCAGGGGATATTTCCAGACAGCAGCGTATGGCTACGCTTTGCACTCCACGTGGGATGTGAATGAATAACACATGACTCAGACCTGACAATAGTGTAGGTCTACAGCGGAGAAGCTCTGCTTTCAAAAAGTGACTGCTATTTAAAGACTgaatttttctttaatttatttatgcataaCACTGTCATTTTAAAACGAGTAAtatatttggttttatttatgaatttgcaCATGTTTACCTTTCgttatgaaataaatgttatgctTAATTTCAAA
>TCONS_00031301
AACACGAGTCGAGACAGTGTCGCTGCAAGAGGTATCTACGAGagagagaaaacccacacgaaacCTCTGTGGATTACTACTGCCACACAACATCGACTTATTCTGTGGAATTATACCTACTATTTGGTGGAATTTCCAGTTGTGGATTATAAACACTTTACGGATAAACATGACTCTGGAGGAAGTTGTTGGATGCAACAGCACTGAGAGAAAGTAAGTGGATGATTTTGTATTATTTCAGGCTCAACGAAATGTTCATTTGAAGCGTTCGTAAACTAAAActgataattattttgttttttgtaaagaaTGGAGACAGTGAGTGAAGCTCTGGAGGAGCTGCTGATGGCTGCACAGCGACAAAACTGTCTGACAGTTGGAGTCTACGAGTCTGCACAACTCATGAATGTGGATCCAGACAGCGTGGTGCTGTGCGTTCTAGCCACCGATGAGGAGGACGAGAATGATGTTGCGCTTCAGATCCACTTCACGCTCATCCAAGCCTTCTGCTGCGACATCGACATCAACATTGTGCGCGTGTCCGGCATGAGGCGTCTGGCACAGGTTCTCGAAGAGCCTCTGTCCACTGACAATAACGCCAATGAACCAAGAGACCTTCACTGCATACTTGTTACTAACCCCCAAGCCGAGCATCTCAAGCTGAAGGAAGTGGGAAGTTACTGCAAGGAAAGCCGCTGCAGGAACCAGTGGGTGCCTTCTATTGCCCTGCAAGAGCGCTGAAGTGTCGTGCACTGAAATGTGCTGaagagaaatggaatattg

Function

symbol description
gadd45bb Acts upstream of or within somitogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including margin; mesoderm; retina; solid lens vesicle; and yolk syncytial layer. Orthologous to human GADD45B (growth arrest and DNA damage inducible beta).

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0000185 activation of MAPKKK activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050223-1 Acts upstream of or within somitogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including margin; mesoderm; retina; solid lens vesicle; and yolk syncytial layer. Orthologous to human GADD45B (growth arrest and DNA damage inducible beta).

Ensembl:

ensembl_id ENSDARG00000013576

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031300 False 1390 mRNA 0.46 4 36939749 36941988
TCONS_00031301 True 783 lncRNA 0.47 3 36939942 36941479

Neighbor

gene id symbol gene type direction distance location
XLOC_015716 rabgap1l2 coding upstream 34554 36898982 ~ 36905195 (+)
XLOC_015715 si:dkey-193b15.8 coding upstream 46866 36862473 ~ 36892883 (+)
XLOC_015714 nrd1a coding upstream 85249 36828243 ~ 36854500 (+)
XLOC_015713 dre-mir-2198 coding upstream 185991 36753649 ~ 36753758 (+)
XLOC_015712 NA coding upstream 195837 36742343 ~ 36743912 (+)
XLOC_015718 slc1a8b coding downstream 168516 37110504 ~ 37122351 (+)
XLOC_015719 pex19 coding downstream 192293 37134281 ~ 37146572 (+)
XLOC_015720 copa coding downstream 234826 37176814 ~ 37206080 (+)
XLOC_015721 apoda.2 coding downstream 265473 37207461 ~ 37215989 (+)
XLOC_015722 samd7 coding downstream 285023 37227011 ~ 37242537 (+)
XLOC_015707 NA non-coding upstream 296987 36638931 ~ 36642762 (+)
XLOC_015705 NA non-coding upstream 375276 36552692 ~ 36564473 (+)
XLOC_015704 NA non-coding upstream 468639 36379239 ~ 36471110 (+)
XLOC_015725 NA non-coding downstream 359420 37301408 ~ 37307571 (+)
XLOC_015733 NA non-coding downstream 884746 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 non-coding downstream 894631 37836619 ~ 37846849 (+)
XLOC_015737 LO017954.1 non-coding downstream 984392 37926380 ~ 37927412 (+)
XLOC_015738 NA non-coding downstream 1025997 37967985 ~ 37971044 (+)

Expression


Co-expression Network