XLOC_015719 (pex19)


Basic Information

Item Value
gene id XLOC_015719
gene name pex19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37134281 ~ 37146572 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031304
CGCTTATGATACAACTAGATAGTTTTTACGTGTTTTTGTCTCTTCTATTGTCGTTTTTCCATTTCTTTTTATTTGGGGGAAGATTTTACAGCACAAGTGCTCTTGATGATTTTGACAAGACCAGTGTGCCACCTGTGGCCCCTGAAGCCCCCTCTGACCCTGATGCCGGTGCTAAGAGTAACGAGAAGcCTCCGCTACTGGAGGACAGTAAGTTCTTTGAATCTCTTTTTGAGGGTGAGATGGCCAACCAAGCACGTGAGGAGTGGGAAAAAGCCATGGCTGAGCTAGCACAAGAAGAACCTGATCTTCTACAGCATTTTCATAAGCTGTCTGAGGCAGCAGGAAAAGTCGGCACAGATGTAGCTTCACAACAAGAGTTCACCTCCTGTCTTAAAGAGACCCTTAATGGCTTGGCCAAAAATGCAGACAACTTGCAGAGTGCAGGACTGGCTGGAGATGATCTGGTAAAGACCCTGGAGAACATGGGATTGAATGAAAATGGGGAGGCAGGAGGAGAAGATGGCAATATTCTGCCAATTATGCAGTCCATCATGCAGAACCTTTTGTCCAAAGAAGTTCTGTACCCATCACTTAAAGAGATAACAGACAAGTACCCTGAATGGTTGGAGAGCAACCGGCAGTCCCTTCCTTCTGACCAATTCACGAGGTATGAGCAACAGTACAAGATAATGGGAGAGATATGCAACCAGTTTGAGAAAGATGAAGACAAAGACAGCGCATTTGAAAACATTCTGGAACTCATGCAAAAGCTGCAAGACTTGGGTCAACCTCCAAAAGAGCTTGCTGGAGAGGCTcCTCCTGGCTTGAATTTTGACCCAGAAGCTCTGCACCTTCCTGGAGCACAAGGGCTTCCCGGAGCAGATCAGTGCTCGGTCATGTGATCTCAGTGAGGTCAAAATTAATGTACGTTTGAAAAGATACAATTCGGAGCTAATTATCTGAACCTGATTTGGACACGGTTGATCATGCTCCCCTTTTAAAGGAGTTTGTGTCCGAAACTGAAACTGTGAACGCTCGCTACTCTAATTTTACCCTGTAGTTGTTGTCCACAGAGGTTCTTTTCATATCCATCGCTAATCCATTCATAAACTCACAGTAGAGCAGCTCTTATTGTTTTGAGTGAAGCTTGATATTTCAGAGTGATGGCAGATGGTAAAGTGCTAGAATTGAGATCTGGTTTTGTAAAGGTTTTACACCTTTTCACACCACATTTGACTGGTTGTACGGTGGAATTTATTTAGGGAAAAAGTACAGACAAATGTATAGAGCTCAAAGTGACAGGAAATGTATTTCCGTTGATTAGTTTCATTTGACATCTTGATCTCAGAGGAATGGTGAACGTTCACAGATGCTCATCTGTTTTCACACTTTTAATATCTGTAATTAGTCAGTGACCAAATGGATTTATAGGAAAAGACACTTAAGATTCAGGATTATAATCACGATATAATTTTATTGACCCGTAGACTGCATTTGTGATTAGAATAATTCTCTCTCCTTTTGTCTCCTAACGTTTGCTGTATTTGTCTGAATATCAGCATTATTAAGTGTTGAATTGCCATGTAGATCAATAATTCCCATTATTCCTGTAATGGTGCCTCTGTGTGATGTGTTATTGTCACAATAGTCCTAATTTGCCTTGGTTAAATGAATATTTCATGGTTTCAAAACTGATACATTGTATTAACATTGGAAGAACAAAAAGTAACTAAAGGTTGCTGTCATTCGGTTTTGAGGGGGTGTTTACATGATTATGTTGTGCAAACCTGTCAATGCATTGAAAAAGGATGCTAAAGCAGGATCAAATGTGTAGCTGGTCATCAATTTGCTTTCCTAACACATGCAATTGGAGGTTGGTTGGTGTGGTGTTAATGTGGTTGGTAATAAGAAAGATTAAGAAGGAAAGAATATGGATGAACAGGACAAAAATATGTAACAGTTAAAACACTCAGGGGTTGCTCGCACAACCAAGTACTTAAATCAGCTCATCCGTTATCCCAATCAATGTTCCATTGATCATGTCTGCCCAACTATATTAAAGAACTGCAattctcaaaaatgtaaataaatgtttaaccttGCCTTGTTA
>TCONS_00031305
GCGACAAACTGGCTTGTCTTGTCATTGAGGAGCAAGATGGCGTCAGCATCAGAGCACCAGGGGGCTCCAGACAGCGAATTGGACGAATTATTAGACAGTGCTCTTGATGATTTTGACAAGACCAGTGTGCCACCTGTGGCCCCTGAAGCCCCCTCTGACCCTGATGCCGGTGCTAAGAGTAACGAGAAGcCTCCGCTACTGGAGGACAGTAAGTTCTTTGAATCTCTTTTTGAGGGTGAGATGGCCAACCAAGCACGTGAGGAGTGGGAAAAAGCCATGGCTGAGCTAGCACAAGAAGAACCTGATCTTCTACAGCATTTTCATAAGCTGTCTGAGGCAGCAGGAAAAGTCGGCACAGATGTAGCTTCACAACAAGAGTTCACCTCCTGTCTTAAAGAGACCCTTAATGGCTTGGCCAAAAATGCAGACAACTTGCAGAGTGCAGGACTGGCTGGAGATGATCTGGTAAAGACCCTGGAGAACATGGGATTGAATGAAAATGGGGAGGCAGGAGGAGAAGATGGCAATATTCTGCCAATTATGCAGTCCATCATGCAGAACCTTTTGTCCAAAGAAGTTCTGTACCCATCACTTAAAGAGATAACAGACAAGTACCCTGAATGGTTGGAGAGCAACCGGCAGTCCCTTCCTTCTGACCAATTCACGAGGTATGAGCAACAGTACAAGATAATGGGAGAGATATGCAACCAGTTTGAGAAAGATGAAGACAAAGACAGCGCATTTGAAAACATTCTGGAACTCATGCAAAAGCTGCAAGACTTGGGTCAACCTCCAAAAGAGCTTGCTGGAGAGGCTcCTCCTGGCTTGAATTTTGACCCAGAAGCTCTGCACCTTCCTGGAGCACAAGGGCTTCCCGGAGCAGATCAGTGCTCGGTCATGTGATCTCAGTGAGGTCAAAATTAATGTACGTTTGAAAAGATACAATTCGGAGCTAATTATCTGAACCTGATTTGGACACGGTTGATCATGCTCCCCTTTTAAAGGAGTTTGTGTCCGAAACTGAAACTGTGAACGCTCGCTACTCTAATTTTACCCTGTAGTTGTTGTCCACAGAGGTTCTTTTCATATCCATCGCTAATCCATTCATAAACTCACAGTAGAGCAGCTCTTATTGTTTTGAGTGAAGCTTGATATTTCAGAGTGATGGCAGATGGTAAAGTGCTAGAATTGAGATCTGGTTTTGTAAAGGTTTTACACCTTTTCACACCACATTTGACTGGTTGTACGGTGGAATTTATTTAGGGAAAAAGTACAGACAAATGTATAGAGCTCAAAGTGACAGGAAATGTATTTCCGTTGATTAGTTTCATTTGACATCTTGATCTCAGAGGAATGGTGAACGTTCACAGATGCTCATCTGTTTTCACACTTTTAATATCTGTAATTAGTCAGTGACCAAATGGATTTATAGGAAAAGACACTTAAGATTCAGGATTATAATCACGATATAATTTTATTGACCCGTAGACTGCATTTGTGATTAGAATAATTCTCTCTCCTTTTGTCTCCTAACGTTTGCTGTATTTGTCTGAATATCAGCATTATTAAGTGTTGAATTGCCATGTAGATCAATAATTCCCATTATTCCTGTAATGGTGCCTCTGTGTGATGTGTTATTGTCACAATAGTCCTAATTTGCCTTGGTTAAATGAATATTTCATGGTTTCAAAA
>TCONS_00031306
AAACTGGCTTGTCTTGTCATTGAGGAGCAAGATGGCGTCAGCATCAGAGCACCAGGGGGCTCCAGACAGCGAATTGGACGAATTATTAGACAGTGCTCTTGATGATTTTGACAAGACCAGTGTGCCACCTGTGGCCCCTGAAGCCCCCTCTGACCCTGATGCCGGTGCTAAGAGTAACGAGAAGGGTGAGATGGCCAACCAAGCACGTGAGGAGTGGGAAAAAGCCATGGCTGAGCTAGCACAAGAAGAACCTGATCTTCTACAGCATTTTCATAAGCTGTCTGAGGCAGCAGGAAAAGTCGGCACAGATGTAGCTTCACAACAAGAGTTCACCTCCTGTCTTAAAGAGACCCTTAATGGCTTGGCCAAAAATGCAGACAACTTGCAGAGTGCAGGACTGGCTGGAGATGATCTGGTAAAGACCCTGGAGAACATGGGATTGAATGAAAATGGGGAGGCAGG
>TCONS_00031307
GAGGAGCAAGATGGCGTCAGCATCAGAGCACCAGGGGGCTCCAGACAGCGAATTGGACGAATTATTAGACAGTAAGGTGCTCTTGATGATTTTGACAAGACCAGTGTGCCACCTGTGGCCCCTGAAGCCCCCTCTGACCCTGATGCCGGTGCTAAGAGTAACGAGAAGcCTCCGCTACTGGAGGACAGTAAGTTCTTTGAATCTCTTTTTGAGGGTGAGATGGCCAACCAAGCACGTGAGGAGTGGGAAAAAGCCATGGCTGAGCTAGCACAAGAAGAACCTGATCTTCTACAGCATTTTCATAAGCTGTCTGAGGCAGCAGGAAAAGCACAGATGTAGCTTCACAACAAGAGTTCACCTCCTGTCTTAAAGAGACCCTTAATGGCTTGGCCAAAAATGCAGACAACTTGCAGAGTGCAGGACTGGCTGGAGATGATCTGGTAAAGACCCTGGAGAACATGGGATTGAATGAAAATGGGGAGGCAGGAGGAGAAGATGGCAATATTCTGCCAATTATGCAGTCCATCATGCAGAACCTTTTGTCCAAAGAAGTTCTGTACCCATCACTTAAAGAGATAACAGACAAGTACCCTGAATGGTTGGAGAGCAACCGGCAGTCCCTTCCTTCTGACCAATTCACGAGGTATGAGCAACAGTACAAGATAATGGGAGAGATATGCAACCAGTTTGAG

Function

symbol description
pex19 Predicted to enable peroxisome membrane targeting sequence binding activity. Predicted to be involved in protein import into peroxisome membrane. Predicted to act upstream of or within peroxisome organization. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 12A. Orthologous to human PEX19 (peroxisomal biogenesis factor 19).

GO:

id name namespace
GO:0045046 protein import into peroxisome membrane biological_process
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0033328 peroxisome membrane targeting sequence binding molecular_function

KEGG:

id description
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-050417-424 Predicted to enable peroxisome membrane targeting sequence binding activity. Predicted to be involved in protein import into peroxisome membrane. Predicted to act upstream of or within peroxisome organization. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 12A. Orthologous to human PEX19 (peroxisomal biogenesis factor 19).

Ensembl:

ensembl_id ENSDARG00000004891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031304 False 2110 mRNA 0.41 8 37134281 37146572
TCONS_00031305 False 1692 mRNA 0.43 8 37140448 37146153
TCONS_00031306 False 462 mRNA 0.50 5 37140453 37143299
TCONS_00031307 True 692 processed_transcript 0.48 6 37140474 37143617

Neighbor

gene id symbol gene type direction distance location
XLOC_015718 slc1a8b coding upstream 11930 37110504 ~ 37122351 (+)
XLOC_015717 gadd45bb coding upstream 192293 36939749 ~ 36941988 (+)
XLOC_015716 rabgap1l2 coding upstream 229086 36898982 ~ 36905195 (+)
XLOC_015715 si:dkey-193b15.8 coding upstream 241398 36862473 ~ 36892883 (+)
XLOC_015714 nrd1a coding upstream 279781 36828243 ~ 36854500 (+)
XLOC_015720 copa coding downstream 30242 37176814 ~ 37206080 (+)
XLOC_015721 apoda.2 coding downstream 60889 37207461 ~ 37215989 (+)
XLOC_015722 samd7 coding downstream 80439 37227011 ~ 37242537 (+)
XLOC_015723 sec62 coding downstream 98810 37245382 ~ 37265903 (+)
XLOC_015724 gpr160 coding downstream 148516 37295088 ~ 37296159 (+)
XLOC_015713 dre-mir-2198 non-coding upstream 380523 36753649 ~ 36753758 (+)
XLOC_015712 NA non-coding upstream 390369 36742343 ~ 36743912 (+)
XLOC_015707 NA non-coding upstream 491519 36638931 ~ 36642762 (+)
XLOC_015705 NA non-coding upstream 569808 36552692 ~ 36564473 (+)
XLOC_015704 NA non-coding upstream 663171 36379239 ~ 36471110 (+)
XLOC_015725 NA non-coding downstream 154836 37301408 ~ 37307571 (+)
XLOC_015733 NA non-coding downstream 680162 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 non-coding downstream 690047 37836619 ~ 37846849 (+)
XLOC_015737 LO017954.1 non-coding downstream 779808 37926380 ~ 37927412 (+)
XLOC_015738 NA non-coding downstream 821413 37967985 ~ 37971044 (+)

Expression


Co-expression Network