XLOC_015720 (copa)


Basic Information

Item Value
gene id XLOC_015720
gene name copa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37176814 ~ 37206080 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031308
TGGATTGAGTAGACGTGTCAGCTACGGAAGTGGAGCTGCAGAATCAAACACGCAAAGTCCCTTCCTACCGGGGGATGATTTTAGGCTTCTAATTCGCATAAACGGATCAATATCTTCACACATAACACATTCCTGTTAATTTTACATTATCAGTGGAGATGTTGACCAAATTTGAGACAAAGTCGGCCCGAGTGAAAGGGCTGAGTTTCCATCCAAAGCGGCCCTGGATACTCGCTAGTTTGCACAATGGTGTCATCCAGCTGTGGGATTATCGCATGTGCACTCTAATCGACAAGTTTGATGAACACGATGGTCCAGTCAGAGGTATTGACTTTCATAAGCAGCAGCCTCTGTTTGTGTCTGGAGGAGATGACTACAAGATCAAGGTTTGGAACTACAAGCTGCGTCGATGTCTTTTCACTCTTCTTGGACATCTTGACTACATTCGCACCACATTCTTCCACCATGAGTACCCCTGGATCTTGAGTGCTTCAGATGATCAGACTATTCGTATTTGGAACTGGCAGTCCAGGACGTGTGTCTGTGTGCTGACGGGACATAATCATTATGTGATGTGCGCACAGTTCCATCCCTCTGAGGACCTGGTGGTGTCGGCAAGCTTGGATCAGACTGTGCGCGTGTGGGATATTTCCGGTCTGAGAAAGAAGAACTTATCTCCGGGTGCTGTGGACACTGAGGTGCGCGGCATCTCTGGTGTCGACCTGTTTGGAGCCTCTGATGCAGTAGTCAAACATGTTCTGGAGGGTCATGATCGAGGCGTAAACTGGGCAGCTTTCCATCCTAGCATGCCTCTTATTGTGTCAGGAGCCGATGACCGGCAGGTGAAGATTTGGAGGATGAATGAGTCTAAAGCATGGGAGTTGGACACCTGTCGAGGACACTACAACAATGTGTCCTGTGCGGTGTTTCACCCCCGTCAGGAGCTCATCCTGTCCAACTCTGAGGACAAGAGCATCCGTGTGTGGGATATGTCCAAGAGAACAGGCGTCCAGACCTTTCGCAGAGATCACGACCGCTTCTGGGTTCTGGGTGCTCACCCCAACCTCAACCTGTTTGCTGCTGGCCATGACAGTGGAATGCTGGTGTTTAAACTGGAAAGGGAACGTCCAGCTTATGCAGTGTATGGCAACATGCTTTACTATGTAAAGGATCGTTTCCTGCGTCAGCTCGACTTTAACAGCAGTAAAGATACAGCTGTGATGCAGCTACGCAGTGGATCCAAATTCCCAGTGTTCAGCATGTCCTACAACCCAGCGGAAAATGCTGTGCTGTTGTGCACTAGAGCTACTAATTTGGAAAACAGCACCTATGATCTGTACTCCATTCCCAGAGAGAGTGACTCCCAGAATCCTGATGCTCCTGAGGGAAAACGCTCCTCTGGTCTGACTGCAGTTTGGGTGGCCAGGAACCGATTTGCTGTACTTGACCGCATGCACTCTCTCTTGATAAAAAACCTGAAGAATGAGATTGTGAAGAAGGTCCAGGTCCCGAGCTGTGAGGAGATTTTCTATGCTGGAACTGGCTCACTCCTGCTGCGGGATGCTGAAGGAGTCACTCTATTTGATGTCCAGCAGAAGCGCTCTCTGGCCACGGTCAAAATAGCCAAAGTCAAATATGTGGTGTGGAGCTCCGACGCCAACCACGTGGCCCTGCTGGCCAAACATGCCATCATGATCTGCAACAAGAAGTTAGAGAGTCTCTGCAACATCCATGAGAACATCCGGGTGAAGAGTGGAGCCTGGGCTGAGAATGAAGTCTTCATCTACACCACCTCCAACCATATCAAATATGCTCTGACTTCTGGCGATCATGGTATAATCCGTACATTGGATCTGCCCATCTATGTGACAAGAGTGAGGGGTAACAGTGTTTATTGCCTGGATCGGGAGTGCAGACCACGTGTGCTTAACATTGACCCCACCGAGTACCGCTTTAAACTGGCTCTGGTCAACCGCAAATATGAAGAGGTTCTTCACATGGTGCGTAATGCTAAGCTAGTAGGCCAGTCCATCATTGCCTACCTACAAAAGAAGGGCTACCCAGAGGTCGCGCTGCATTTCGTCAAAGATGAGAAGACTCGTTTCAGTTTGGCACTGGAGTGTGGAAACATTGAGGTGGCGCTGGAGGCTGCAAAAGCCCTAGATGAGCGAAGCTGTTGGGAGCGTCTTGGTGAGGCTGCACTTCTGCAGGGCCATCACCAGGTGGTGGAGATGTGCTACCAGAGAACCAAGAACTTTGACAAGCTCACATTTCTGTACCTCATCACTGGCAACCTGACAAAGCTCAGGAAGATGATGAAGATCGCTGAGATAAGAAAGGACATGAGTGGACACTATCAGGGCGCTCTGTACCTGGGTGACGTCAGTGAGCGAGTGCGGATCCTCAAGAACTGTGGGCAGAAGTCTCTAGCTTACCTGACCGCTGCCACTCACGGGATGGATGAGGAAGCTGAAGCCCTGAAGGAGACCTTTGACCTTGAAAAAGAAATGGTGCCAGAGGTGGACCCCAACGCTCAACTGCTGCAGCCTCCACCTCCCATCAACCCTCTGGACACAAACTGGCCTTTGCTCACAGTCTCCAAGGGCTTCTTTGAGGGAGCTATCGCTGCCAAAGGACGAGCAGGGCAGATGGTTGCTGATCTGGACATGGATGCTCCAGGAGGAGAAGGGTGGGGAGAAGATGCAGAACTTCATTTGGATGAAGACGGCTTCATGGATGCTCAGGAGGGACTGGGTGATGAGGGAGCCATTGGGAAAGACGACGGAGGAGGCTGGGATGTTGAAGAAGATCTGGATCTCCCACCAGAGCTGGACGTACCTTCTGTTGGTGGAGGTGGCGCAGAGGGTGAAGGCTTCTTTGTGCCACCCACTAAGGGCACAAGCCCAACCCAGATGTGGTGCAACAACTCTCAGCTGTCAGTGGATCACATACTGGCTGGCTCTTTTGAGACTGCTATGAGGTTGCTACATGACCAGGTTGGCGTTGTTCAGTTTGGGCCGTATAAGCAGCTCTTCATGCAGACTTTGTCCCGCGGCCGCACCTGTTACCTGGGCCTGCCATCTTTGCCCTGCCTGCACAGTTTTCCCCTGAGGAACTGGAAGGACAGCGGGCCTAAAGGAGGTCTGCCAGCAGTGGGTCTGCGTCTCGCTGACCTCATCTCTCGCCTGCAGCAGTGCTATCAGCTGACCACCTCAGGCCGATTCGAAGATGCCGTGGAACGCTTCAGAGCCATTCTCCTCTCCGTGCCTCTGCTCGTGGTCGACAACAAACAAGAGATTGCAGAGGCCCAGCAGCTGATCACTATTTGTAAGGAGTATATTATTGGCCTCACGATGGAGACGGAGAGGAAGAAACTCCCTAAAGACAGTCTTGATGAGCAGAAGAGAATTTGTGAGATGGCGGCGTATTTCACACACTGCAGTCTTCAGCCTGTCCACATGGTGTTGGTTTTGAGAACGGCACTCAATCTTTTCTTCAAACTGCGCAACTTTAAAACTGCAGCAGGTTTTGCTCGCCGTCTGCTTGAGCTAGGCCCCAAACCTGAAGTGGCACAGCAGACACGTAAAATTCTCTCTGCCTGTGAGAAGAGTCTGACAGATGCTCACCAGCTCAACTATGATCCCCACAATCCCTTCGACATCTGCGCAGCCTCTTACACTCCTCTGTACCGCGGGCGACCTGTAGAGAAATGTCCCTTGTCTGGAGCCTGCTACTGCCCCAAATACAAAGGAGAGGTCTGCAGGGTCACACAGGTAACTGAGATTGGGAAAGATGTGATCGGGTTGCGTGTCAGTCCACTGCAGTTCCGCTGAACATATAAACGTGGATGAAAATAAACATGCTTCTCCACACATATGCTTTTCCTTTATAAGATGAAGTAATGAGATCTTTTAAGATCAGAACGTGATTAAAAATATCTTGTTATGTGACTAAATACTCTGTGACTATCCTTTCTGTTACTACAGTATATCTGAGAGCTCTACTGTCTGTATGCTTGCATTCATATGAatatcataattataataattgtgcATCTGTCACTCAGTGCAaaacaagtttcttttttttgtgaactctctaaatattaaaataaaattctggTAAACAAAA
>TCONS_00031309
ATTGAGTAGACGTGTCAGCTACGGAAGTGGAGCTGCAGAATCAAACACGCAAAGTCCCTTCCTACCGGGGGATGATTTTAGGCTTCTAATTCGCATAAACGGATCAATATCTTCACACATAACACATTCCTGTTAATTTTACATTATCAGTGGAGATGTTGACCAAATTTGAGACAAAGTCGGCCCGAGTGAAAGGGCTGAGTTTCCATCCAAAGCGGCCCTGGATACTCGCTAGTTTGCACAATGGTGTCATCCAGCTGTGGGATTATCGCATGTGCACTCTAATCGACAAGTTTGATGAACACGATGGTCCAGTCAGAGGTATTGACTTTCATAAGCAGCAGCCTCTGTTTGTGTCTGGAGGAGATGACTACAAGATCAAGGTTTGGAACTACAAGCTGCGTCGATGTCTTTTCACTCTTCTTGGACATCTTGACTACATTCGCACCACATTCTTCCACCATGAGTACCCCTGGATCTTGAGTGCTTCAGATGATCAGACTATTCGTATTTGGAACTGGCCTTTGCTCACAGTCTCCAAGGGCTTCTTTGAGGGAGCTATCGCTGCCAAAGGACGAGCAGGGCAGATGGTTGCTGATCTGGACATGGATGCTCCAGGAGGAGAAGGGTGGGGAGAAGATGCAGAACTTCATTTGGATGAAGACGGCTTCATGGATGCTCAGGAGGGACTGGGTGATGAGGGAGCCATTGGGAAAGACGACGGAGGAGGCTGGGATGTTGAAGAAGATCTGGATCTCCCACCAGAGCTGGACGTACCTTCTGTTGGTGGAGGTGGCGCAGAGGGTGAAGGCTTCTTTGTGCCACCCACTAAGGGCACAAGCCCAACCCAGATGTGGTGCAACAACTCTCAGCTGTCAGTGGATCACATACTGGCTGGCTCTTTTGAGACTGCTATGAGGTTGCTACATGACCAGGTTGGCGTTGTTCAGTTTGGGCCGTATAAGCAGCTCTTCATGCAGACTTTGTCCCGCGGCCGCACCTGTTACCTGGGCCTGCCATCTTTGCCCTGCCTGCACAGTTTTCCCCTGAGGAACTGGAAGGACAGCGGGCCTAAAGGAGGTCTGCCAGCAGTGGGTCTGCGTCTCGCTGACCTCATCTCTCGCCTGCAGCAGTGCTATCAGCTGACCACCTCAGGCCGATTCGAAGATGCCGTGGAACGCTTCAGAGCCATTCTCCTCTCCGTGCCTCTGCTCGTGGTCGACAACAAACAAGAGATTGCAGAGGCCCAGCAGCTGATCACTATTTGTAAGGAGTATATTATTGGCCTCACGATGGAGACGGAGAGGAAGAAACTCCCTAAAGACAGTCTTGATGAGCAGAAGAGAATTTGTGAGATGGCGGCGTATTTCACACACTGCAGTCTTCAGCCTGTCCACATGGTGTTGGTTTTGAGAACGGCACTCAATCTTTTCTTCAAACTGCGCAACTTTAAAACTGCAGCAGGTTTTGCTCGCCGTCTGCTTGAGCTAGGCCCCAAACCTGAAGTGGCACAGCAGACACGTAAAATTCTCTCTGCCTGTGAGAAGAGTCTGACAGATGCTCACCAGCTCAACTATGATCCCCACAATCCCTTCGACATCTGCGCAGCCTCTTACACTCCTCTGTACCGCGGGCGACCTGTAGAGAAATGTCCCTTGTCTGGAGCCTGCTACTGCCCCAAATACAAAGGAGAGGTCTGCAGGGTCACACAGGTAACTGAGATTGGGAAAGATGTGATCGGGTTGCGTGTCAGTCCACTGCAGTTCCGCTGAACATATAAACGTGGATGAAAATAAACATGCTTCTCCACACATATGCTTTTCCTTTATAAGATGAAGTAATGAGATCTTTTAAGATCAGAACGTGATTAAAAATATCTTGTTATGTGACTAAATACTCTGTGACTATCCTTTCTGTTACTACAGTATATCTGAGAGCTCTACTGTCTGTATGCTTGCATTCATATGAatatcataattataataattgtgcATCTGTCACTCAGTGCAaaacaagtttcttttttttgtgaactctctaaatattaaaataaaattctggT
>TCONS_00031310
TGCAGAATCAAACACGCAAAGTCCCTTCCTACCGGGGGATGATTTTAGGCTTCTAATTCGCATAAACGGATCAATATCTTCACACATAACACATTCCTGTTAATTTTACATTATCAGTGGAGATGTTGACCAAATTTGAGACAAAGTCGGCCCGAGTGAAAGGGCTGAGTTTCCATCCAAAGCGGCCCTGGATACTCGCTAGTTTGCACAATGGTGTCATCCAGCTGTGGGATTATCGCATGTGCACTCTAATCGACAAGTTTGATGAACACGATGCAGCCTCTGTTTGTGTCTGGAGGAGATGACTACAAGATCAAGGTTTGGAACTACAAGCTGCGTCGATGTCTTTTCACTCTTCTTGGACATCTTGACTACATTCGCACCACATTCTTCCACCATGAGTACCCCTGGATCTTGAGTGCTTCAGATGATCAGACTATTCGTATTTGGAACTGGCAGTCCAGGACGTGTGTCTGTGTGCTGACGGGACATAATCATTATGTGATGTGCGCACAGTTCCATCCCTCTGAGGACCTGGTGGTGTCGGCAAGCTTGGATCAGACTGTGCGCGTGTGGGATATTTCCGGTGAGGAGGCTTGGAACAGGATTGAGTGTTTTGGGAAGGTTGGGGAGGTGGGAATGCAGAAAGAGAAGATGGAGGAAGATGAAGGCAGCTTTATGTCATTGTCTTCCTCATGTCCTCTTTTTACATTGTGTAGAGAACAAAACTCTGTGGGCTCAAAGCAAAAATACCTCTAATGTTTGTCTTGTGATTTGATCGATATATCCTTG
>TCONS_00031311
GGGGGATGATTTTAGGCTTCTAATTCGCATAAACGGATCAATATCTTCACACATAACACATTCCTGTTAATTTTACATTATCAGTGGAGATGTTGACCAAATTTGAGACAAAGTCGGCCCGAGTGAAAGGGCTGAGTTTCCATCCAAAGCGGCCCTGGATACTCGCTAGTTTGCACAATGGTGTCATCCAGCTGTGGGATTATCGCATGTGCACTCTAATCGACAAGTTTGATGAACACGATGGTCCAGTCAGAGGTATTGACTTTCATAAGCAGCAGCCTCTGTTTGTGTCTGGAGGAGATGACTACAAGATCAAGGTTTGGAACTACAAGCTGCGTCGATGTCTTTTCACTCTTCTTGGACATCTTGACTACATTCGCACCACATTCTTCCACCATGAGTACCCCTGGATCTTGAGTGCTTCAGATGATCAGACTATTCGTATTTGGAACTGGCAGTCCAGGACGTGTGTCTGTGTGCTGACGGGACATAATCATTATGTGATGTGCGCACAGTTCCATCCCTCTGAGGACCTGGTGGTGTCGGCAAGCTTGGATCAGACTGTGCGCGTGTGGGATATTTCCGGTGAGGAGGCTTGGAACAGGATTGAGTGTTTTGGGAAGGTTGGGGAGGTGGGAATGCAGAAAGAGAAGATGGAGGAAGATGAAGGCAGCTTTATGTCATTGTCTTCCTCATGTCCTCTTTTTACATTGTGTAGAGAACAAAACTCTGTGGGCTCAAAGCAAAAATACCTCTAATGTTTGTCTTGTGATTTGATCGATATATCCTTG
>TCONS_00031312
CCATCATGATCTGCAACAAGAAGTTAGAGAGTCTCTGCAACATCCATGAGAACATCCGGGTGAAGAGTGGAGCCTGGGCTGAGAATGAAGTCTTCATCTACACCACCTCCAACCATATCAAATATGCTCTGACTTCTGGCGATCATGGTATAATCCGTACATTGGATCTGCCCATCTATGTGACAAGAGTGAGGGGTAACAGTGTTTATTGCCTGGATCGGGAGTGCAGACCACGTGTGCCAGAGGTGGACCCCAACGCTCAACTGCTGCAGCCTCCACCTCCCATCAACCCTCTGGACACAAACTGGCCTTTGCTCACAGTCTCCAAGGGCTTCTTTGAGGGAGCTATCGCTGCCAAAGGACGAGCAGGGCAGATGGTTGCTGATCTGGACATGGATGCTCCAGGAGGAGAAGGGTGGGGAGAAGATGCAGAACTTCATTTGGATGAAGACGGCTTCATGGATGCTCAGGAGGGACTGGGTGATGAGGGAGCCATTGGGAAAGACGACGGAGGAGGCTGGGATGTTGAAGAAGATCTGGATCTCCCACCAGAGCTGGACGTACCTTCTGTTGGTGGAGGTGGCGCAGAGGGTGAAGGCTTCTTTGTGCCACCCACTAAGGGCACAAGCCCAACCCAGATGTGGTGCAACAACTCTCAGCTGTCAGTGGATCACATACTGGCTGGCTCTTTTGAGACTGCTATGAGGTTGCTACATGACCAGGTTGGCGTTGTTCAGTTTGGGCCGTATAAGCAGCTCTTCATGCAGACTTTGTCCCGCGGCCG

Function

symbol description
copa Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axis; hatching gland; mesoderm; notochord; and pectoral fin. Orthologous to human COPA (COPI coat complex subunit alpha).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0061053 somite development biological_process
GO:0030903 notochord development biological_process
GO:0030117 membrane coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04016 MAPK signaling pathway - plant
ko04978 Mineral absorption
ko01524 Platinum drug resistance
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-020905-2 Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axis; hatching gland; mesoderm; notochord; and pectoral fin. Orthologous to human COPA (COPI coat complex subunit alpha).

Ensembl:

ensembl_id ENSDARG00000004173

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031308 False 4131 mRNA 0.50 29 37176814 37206080
TCONS_00031309 False 2062 mRNA 0.48 14 37176817 37206072
TCONS_00031310 False 792 lncRNA 0.46 6 37176850 37182269
TCONS_00031311 False 791 lncRNA 0.46 6 37176883 37182269
TCONS_00031312 True 784 processed_transcript 0.53 7 37192441 37201587

Neighbor

gene id symbol gene type direction distance location
XLOC_015719 pex19 coding upstream 30242 37134281 ~ 37146572 (+)
XLOC_015718 slc1a8b coding upstream 54463 37110504 ~ 37122351 (+)
XLOC_015717 gadd45bb coding upstream 234826 36939749 ~ 36941988 (+)
XLOC_015716 rabgap1l2 coding upstream 271619 36898982 ~ 36905195 (+)
XLOC_015715 si:dkey-193b15.8 coding upstream 283931 36862473 ~ 36892883 (+)
XLOC_015721 apoda.2 coding downstream 1381 37207461 ~ 37215989 (+)
XLOC_015722 samd7 coding downstream 20931 37227011 ~ 37242537 (+)
XLOC_015723 sec62 coding downstream 39302 37245382 ~ 37265903 (+)
XLOC_015724 gpr160 coding downstream 89008 37295088 ~ 37296159 (+)
XLOC_015725 NA coding downstream 95328 37301408 ~ 37307571 (+)
XLOC_015713 dre-mir-2198 non-coding upstream 423056 36753649 ~ 36753758 (+)
XLOC_015712 NA non-coding upstream 432902 36742343 ~ 36743912 (+)
XLOC_015707 NA non-coding upstream 534052 36638931 ~ 36642762 (+)
XLOC_015705 NA non-coding upstream 612341 36552692 ~ 36564473 (+)
XLOC_015704 NA non-coding upstream 705704 36379239 ~ 36471110 (+)
XLOC_015733 NA non-coding downstream 620654 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 non-coding downstream 630539 37836619 ~ 37846849 (+)
XLOC_015737 LO017954.1 non-coding downstream 720300 37926380 ~ 37927412 (+)
XLOC_015738 NA non-coding downstream 761905 37967985 ~ 37971044 (+)

Expression


Co-expression Network