XLOC_015722 (samd7)


Basic Information

Item Value
gene id XLOC_015722
gene name samd7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37227011 ~ 37242537 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031317
ATCTGTAATTAAAGGTCTTTTTTAGTTAAGACAAGGAGCTGGCACTTGTTGGCCAAGCAGTCTGCGGCAGGACCCAAGACCTGAGCATCCCAGAGAGCGTGGGCTTTCTCGCTGGAGCTTTTGGCTTCTTTTTGGAGTCATTTGGAATGAAGTTATGAAAATTTTCATCCTAACTGAGAGCTTGGACTGATTCCCGCTTCTCTGGCAGACATTCAGAGTATTTGGATTCTCAATCTCAGACTACTAGGAGTCACGTTACAGTAATATCTGACGACTGAGAAAAGATAAAGTACAGGAAAAGAAACGAACAGTGTCAGTGTCATGACCCCACGTGAGCAGCTCAGGAAGATCACAGCACTGGGCGAGCAGGGTGCCCTTGATGAGAAGCACTGGTACAGACTGGTCAACGGCATGTCTGCTGGAGCAGAGTTGCGACAGAGGCAGGAGCTCATGATGAGGAACCAGATGGCCATGGCTCCACAGATCCTGGCTCAGGGGCAGCAGAGACTGCAGGGTGTGCCCGCACAGTTCGATCCCCGCTTCATGGAAAGGGAACTGGTGCCGCCCGCTGACATGGTATCAGCTGATGCTAGACAGATCCACATGGGTGCCCACCTCGGCCAACAACTGCCCCCAAACTCTAACGTTATTCCAGGCAGAGGATATCCTGGCACAGgtTACAACTTTCTTCAAACTGAAAGCATGGAGACAGTTGCCAGGCGACAGGAGTTAATTCACAAACAGAACATAGCCAGgatGGAGATGAATGCTATCCTGCACCAAAAAGAATTGGAAAATGCCCACCAAAAGGGTCTTATTAGTATTGAGAATCCCATGATGTACCAGGGCATCCAACCCAATCCAATGGCATTCAGGGGCCGTCAGAGACTCCCAGATGGTCACGATGTGTTCGTCCACCGCACTGCTCTCGAAGACCTGCACGCCAACAGCCTCCTCATGTCAAGCCCTTACCCACCCATCAGCACACTGCAAAGGGAGCGAGGGCGGAGGACAGGCCGAAGGACCACCAATCACAAGAGTTCAGACAGCAACATCACTCTCCCTAAGGGCCAATCAGAAGAGAAGAACATTGAGCAGAGTCCAGGAGCAGCTTCGGGGGAGGAGAAAGAAGCAGAAGGAAAAGGAAGTGACGCCACCAGCAGCAAACCACACCAAACCAAAGCCGAAACAGAGCTGTCTTCTGGCGGCAGTAGGAAAGGTTTTAAGGAGGGAGAGCCTGGGATTCGCAAGGCGTGCATTAGTGGACAGGAGGGATGTGCAGAAGTCAGCAACTGCAATGCAAGCACCAGTGATAAAGACATGTCCAACCCGTGCTCAGCTTTCCAGGACAAGTTTCTGTACCCGTCTACCTCTGGTCCACTCACAGGAATGCCCTATATGCTCCCTGTGCCAGGAAATGGACTTTTGCCACTCGGACCCCCTAATATGTTTCTCAATGGAGAAGAGATGTCTTCATCAGAAGATATCCGCAAGTGGACAGTTGACGACGTCTACAGCTTTATCAGTGAAATCCCAAGCTGTGCCGAATATGCACAGACATTCAAAGAGCACATGATTGATGGAGAGACATTGCCTCTTCTTACAGAGGATCATCTTCTGGACACACTTGGGCTAAAGCTCGGACCTGCGCTCAAGATACGCTCACAGCTGTCCCGGCGGCTGGGTAACATGTTCTACAACATGATGAATTTGCCACTGCCCGTTTCTGGCCTtcagcctccaccagagaagagtGTGGACCGATCGTCAGACATCAGCTCTCCGCTCAACTGCAACAGTGTGGAGATGCTCAGCAGCCCCAGAGACACTGACGCTCTTAAAGCTGCAGAGCCTGTGAGTGAAGCTGACAACCCCTCGCCAAGCCAGATGAGTGAGACCACCTAAACTACTGGACAAATACCTCAAGATCATCTGCTGTCCCCTACTGCACTACTAACATGCTGgattatatgtataatatatatttttaaatgtccatCACAAATGTAACGTTATGCAATAGGGGCTCTAAAAAGTTGATAGACTGTTAAATGCTGGATTTTTCTACATATGTATATTTTGTAATAAGTTAGTCAGCAATTACAAATCAGTTTTTGTCCTTGTCATTATAGccttttatattgtaaaaaaaagggtttttacttgaattattatCTAAT
>TCONS_00031318
CTCGCTGGAGCTTTTGGCTTCTTTTTGGAGTCATTTGGAATGAAGTTATGAAAATTTTCATCCTAACTGAGAGCTTGGACTGATTCCCGCTTCTCTGGCAGACATTCAGAGTATTTGGATTCTCAATCTCAGACTACTAGGAGTCACGTTACAGTAATATCTGACGACTGAGAAAAGATAAAGTACAGGAAAAGAAACGAACAGTGTCATGACCCCACGTGAGCAGCTCAGGAAGATCACAGCACTGGGCGAGCAGGGTGCCCTTGATGAGAAGCACTGGTACAGACTGGTCAACGGCATGTCTGCTGGAGAGTTGCGACAGAGGCAGGAGCTCATGATGAGGAACCAGATGGCCATGGCTCCACAGATCCTGGCTCAGGGGCAGCAGAGACTGCAGGGTGTGCCCGCACAGTTCGATCCCCGCTTCATGGAAAGGGAACTGGTGCCGCCCGCTGACATGGTATCAGCTGATGCTAGACAGATCCACATGGGTGCCCACCTCGGCCAACAACTGCCCCCAAACTCTAACGTTATTCCAGGCAGAGGATATCCTGGCACAGgtTACAACTTTCTTCAAACTGAAAGCATGGAGACAGTTGCCAGGCGACAGGAGTTAATTCACAAACAGAACATAGCCAGgatGGAGATGAATGCTATCCTGCACCAAAAAGAATTGGAAAATGCCCACCAAAAGGGTCTTATTAGTATTGAGAATCCCATGATGTACCAGGGCATCCAACCCAATCCAATGGCATTCAGGGGCCGTCAGAGACTCCCAGATGGTCACGATGTGTTCGTCCACCGCACTGCTCTCGAAGACCTGCACGCCAACAGCCTCCTCATGTCAAGCCCTTACCCACCCATCAGCACACTGCAAAGGGAGCGAGGGCGGAGGACAGGCCGAAGGACCACCAATCACAAGAGTTCAGACAGCAACATCACTCTCCCTAAGGGCCAATCAGAAGAGAAGAACATTGAGCAGAGTCCAGGAGCAGCTTCGGGGGAGGAGAAAGAAGCAGAAGGAAAAGGAAGTGACGCCACCAGCAGCAAACCACACCAAACCAAAGCCGAAACAGAGCTGTCTTCTGGCGGCAGTAGGAAAGGTTTTAAGGAGGGAGAGCCTGGGATTCGCAAGGCGTGCATTAGTGGACAGGAGGGATGTGCAGAAGTCAGCAACTGCAATGCAAGCACCAGTGATAAAGACATGTCCAACCCGTGCTCAGCTTTCCAGGACAAGTTTCTGTACCCGTCTACCTCTGGTCCACTCACAGGAATGCCCTATATGCTCCCTGTGCCAGGAAATGGACTTTTGCCACTCGGACCCCCTAATATGTTTCTCAATGGAGAAGAGATGTCTTCATCAGAAGATATCCGCAAGTGGACAGTTGACGACGTCTACAGCTTTATCAGTGAAATCCCAAGCTGTGCCGAATATGCACAGACATTCAAAGAGCACATGATTGATGGAGAGACATTGCCTCTTCTTACAGAGGATCATCTTCTGGACACACTTGGGCTAAAGCTCGGACCTGCGCTCAAGATACGCTCACAGCTGTCCCGGCGGCTGGGTAACATGTTCTACAACATGATGAATTTGCCACTGCCCGTTTCTGGCCTtcagcctccaccagagaagagtGTGGACCGATCGTCAGACATCAGCTCTCCGCTCAACTGCAACAGTGTGGAGATGCTCAGCAGCCCCAGAGACACTGACGCTCTTAAAGCTGCAGAGCCTGTGAGTGAAGCTGACAACCCCTCGCCAAGCCAGATGAGTGAGACCACCTAAACTACTGGACAAATACCTCAAGATCATCTGCTGTCCCCTACTGCA

Function

symbol description
samd7 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD7 (sterile alpha motif domain containing 7).

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-549 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD7 (sterile alpha motif domain containing 7).

Ensembl:

ensembl_id ENSDARG00000060354

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031317 False 2180 mRNA 0.49 10 37227011 37242537
TCONS_00031318 True 1834 mRNA 0.51 10 37227118 37242307

Neighbor

gene id symbol gene type direction distance location
XLOC_015721 apoda.2 coding upstream 11022 37207461 ~ 37215989 (+)
XLOC_015720 copa coding upstream 20931 37176814 ~ 37206080 (+)
XLOC_015719 pex19 coding upstream 80439 37134281 ~ 37146572 (+)
XLOC_015718 slc1a8b coding upstream 104660 37110504 ~ 37122351 (+)
XLOC_015717 gadd45bb coding upstream 285023 36939749 ~ 36941988 (+)
XLOC_015723 sec62 coding downstream 2845 37245382 ~ 37265903 (+)
XLOC_015724 gpr160 coding downstream 52551 37295088 ~ 37296159 (+)
XLOC_015725 NA coding downstream 58871 37301408 ~ 37307571 (+)
XLOC_015726 phc3 coding downstream 181724 37424261 ~ 37428875 (+)
XLOC_015727 phc3 coding downstream 188380 37430917 ~ 37436938 (+)
XLOC_015713 dre-mir-2198 non-coding upstream 473253 36753649 ~ 36753758 (+)
XLOC_015712 NA non-coding upstream 483099 36742343 ~ 36743912 (+)
XLOC_015707 NA non-coding upstream 584249 36638931 ~ 36642762 (+)
XLOC_015705 NA non-coding upstream 662538 36552692 ~ 36564473 (+)
XLOC_015704 NA non-coding upstream 755901 36379239 ~ 36471110 (+)
XLOC_015733 NA non-coding downstream 584197 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 non-coding downstream 594082 37836619 ~ 37846849 (+)
XLOC_015737 LO017954.1 non-coding downstream 683843 37926380 ~ 37927412 (+)
XLOC_015738 NA non-coding downstream 725448 37967985 ~ 37971044 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_15277204_15286845 SAMD7 coding CI01000004 null 15277204 ~ 15286987 (+)