XLOC_015730 (ftr66)


Basic Information

Item Value
gene id XLOC_015730
gene name ftr66
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37762924 ~ 37770331 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031326
CTCATCGACTGCGCTACAGcagaaaacaacaacatggaagGGCTCCTGGATACAGAAGAGTTTTGCTGTTCAATCTGCCTGGATCTGCTGAAAGATCCAGTCGCGATTCCATGTGGCCACAGCTACTGCATGCTCTGCATTAATGATTACTGGAATCAAAAGGATCATTTGGGGATTTTCAGCTGTCCCCAGTGTGCACAGACATTCACTCCCAGGCCTGTTTTGAACAGAAATACCATGCTGGCAGATGTGGTGAACAAGTTGAGGAAACTGGAGCTACCAGATGAGCAGATTTACAGCAACTTCATGCCAGGTGATGTAGCCTGTGATTTCTGTACAAGTATCAAACAAAAGGCTGTGAAGTCTTGCTTGGTATGTTTGGCATCTTACTGTCAGAATCATCTTGAAGCACACTACAAATCTCCAGCCTTGAAGAAACACAAGCTGATCGAAGCCTTGGCCAACATACAGGAGAAGATCTGTCCTCGTCATGACAAATATTTAGAGATATATTGTCGAACTGATCAACAGTGCATATGTCTTTTATGTGTGATGGATGAGCACAAGGGTCATGATGTCGTACCAGGAGATGTGGAAAGTACAAAGAAACAGAAAGAATTGGGCATGACACGACAGAAATACAAACTCAAAATCCACTCGAAAGAGAAGGACCTAATGGAGCTTAAACAGGCTGTAGATGCCCTGAAAATCTCTGCACAGACTGCTATAGAAAATGGTGAAAAGATCTTCAGTGAGTTGATGCAGTCCATCGAAAGGAGGCAGTGTAAGTTCAGAGATCTGATCAGTGATCAAGAGAAAGCTGCAGAGAGCATGTTGCAGACACTGGAGCAAGAAATCAATGAGCTAAAACAGAGAGATCGCGAGCTCGAGATGCTTCTGAAGTCTGAAGATCAGGTCCATGTTCTTCAGaATTGCAGTTCCTTCTTCTCTGGACTTCCTGACCCTCCGTTCACAATAGCGTCACTTTCCGATTTCGGCAAAGTAAACGATGCGATTTCTGTTTTAAAGAAGAAGCTTGAAGATGTCTTTAAAGGGGAGTGGCTCAGGATCCATCAAGCAGCCAGATCAATGACGATCCTTCACTGCACAGAGCCCAAAATTAGATCCGAGTTCCTGTACCATTCCTGCCCACTGCAACTAAATCCTTTAACAGCCCATAAGGACCTCAGCTTGTCCAAGGGGAACAGAGAAGTGGCCGTCAGGAGCCGAGAGCAATCCTGTCCCGACCACCCGGAGCGCTTTGATTACTGGTGCCAGGTGTTGGGCACCGAGGGCCTGACCGGCTGCAGCTACTGGGAGCTAGAGTGGAGCGGGATGGGAGTAAACATTGCCGTCGCATACAAAAACATTGCCAGGAAAGGGGAAAGCAGTGAAGCGCACTTCGGTCACAATGACAAATCCTGGAGCTTATTCTGCTGCAAGAAGAGTTACGCTTTCTGGTACAACGGGACTGTCAGTAAGATCTCAGAGCCAGGCTCGTCAAAGATCGGCGTTTATCTGGATCATAAGGCTGGGACGCTTGCGTTTTACAGCATTGAAGAGTCAATGACTCTGCTCCACAGGTTTCAGACCACATTCACACAGCCTCTCTATCCTGGCTTTGAGTTTTCCTGCTATGGTTCCTCGATCAAGTTGTGCCATTTGGAGTGAAGGCCCAGTAAAAATTTGGCAAAAGATTTAAGATAAAATATGTTAACAAGTGCTGAAAGTGCtttattatttaactattaacCAACTAAATCATACTAACAGATacgttaaatgttaaaatgaagtttaattttaaactaatttcgagaggagcacgtgctcatgattgacaCAGC

Function

symbol description
ftr66 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-661 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000005327

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031326 True 1847 mRNA 0.45 6 37762924 37770331

Neighbor

gene id symbol gene type direction distance location
XLOC_015729 MYADM coding upstream 7796 37750016 ~ 37755128 (+)
XLOC_015728 sppl2 coding upstream 259915 37480669 ~ 37503009 (+)
XLOC_015727 phc3 coding upstream 325986 37430917 ~ 37436938 (+)
XLOC_015726 phc3 coding upstream 334049 37424261 ~ 37428875 (+)
XLOC_015725 NA coding upstream 455353 37301408 ~ 37307571 (+)
XLOC_015731 ltb4r2b coding downstream 33904 37804235 ~ 37812185 (+)
XLOC_015732 sdr39u1 coding downstream 45356 37815687 ~ 37824427 (+)
XLOC_015733 NA coding downstream 56403 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 coding downstream 66288 37836619 ~ 37846849 (+)
XLOC_015735 cbln13 coding downstream 104440 37874771 ~ 37878304 (+)
XLOC_015713 dre-mir-2198 non-coding upstream 1009166 36753649 ~ 36753758 (+)
XLOC_015712 NA non-coding upstream 1019012 36742343 ~ 36743912 (+)
XLOC_015707 NA non-coding upstream 1120162 36638931 ~ 36642762 (+)
XLOC_015705 NA non-coding upstream 1198451 36552692 ~ 36564473 (+)
XLOC_015737 LO017954.1 non-coding downstream 156049 37926380 ~ 37927412 (+)
XLOC_015738 NA non-coding downstream 197654 37967985 ~ 37971044 (+)
XLOC_015740 NA non-coding downstream 204665 37974996 ~ 37990505 (+)

Expression


Co-expression Network