XLOC_015731 (ltb4r2b)


Basic Information

Item Value
gene id XLOC_015731
gene name ltb4r2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37804235 ~ 37812185 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031327
ATTGTAGTGTATATGGAATCTGATAGCCTGAAATCACAGAAAAATATAAAGAGCTTAAGCATAAGGTTTGTGAACATCTATTCGGGAAACATAAGAAACAAACAGGGAGACCAACTTGGAGATCACATAACCTAACCAGGTCCATCTGGTCACTTCACAGGGAACCAGTTCAGTTATTTGGATCTAATCAAGTCTTTAGTTCTTTCGACCCCTTCCAAATGGCATTGGAAAATGGCAGCTTCTCCATGGAGAACATAACAACCGCCAGTCCCAAACTCAAGAGCGTTGTTGATAACAGTACCTCTGCCACCTTTGGGGCCCTGATCCTCAGCATCGCCATCCTCCTAGGCATTCCTGGCAACCTGTTCATCATCTGGAGTATCTTGGCTCGTGCTCGAAAGCGCTCTGTCACCACCCTGCTTATCCTCAACCTGGCGTTTGCCGACGGTTGCCTGATGTTCCTTACCATCTTCTTCATAATATACCTGGCCAAGCAGAACTGGATCTTTGGAGAAGTCTTGTGCAAGCTGCTCTTCTACTTGTGCAACACAAACATGTACGCGTCTATTATGATCATTACACTGATGAGTTTACACAGACTGGTGGCAGTGATGTGGCCCTCATATCTGAGCGTCTGTACTCGCAGACTGACCGTTTTATTGGTGCTCGGAGGCCTGTGGGTCGCCGTCTTTCTTTTGGCAATGCCTGTTTTGATGTTTAGGGCTGAAAAAACTATTGGGAATAAACGGATAGTGTGTGAAACTCATCACAATCGTACAGAGCAGGCGGTATTCCAGTATACCCTTGAGACAATGGTGGGCTTCCTGGTGCCGTATGTGATCATAGTGAGCAGTTATGTGTGTATCCTCCGCCGCCTCAGACAGACCAAGTTCAAGAGGATGATACGAAGCGAGAACCTCATTCAAGCCATTATTGTGACGTTCTGCATTTTTTGGCTTCCTTACCACATCCTTAATGTAGTGCAGGTGATGGCAGCGCTTACACCAGAGGGAATGCCATTAAAAACACAACTAAAAAACATCTGGGAGTCCAGCCGTGCTGTTACGTCTACTCTGGCATTTATCAGTAGTTGTGCCAATCCTGTCCTATATGCATTTGCTGGACGCTCATACATTAAAGCTGATGGCCTGGCGTTCATGGCCAGACTTTTTGAGGGAACCGTTCTGGACTACAGTGCTCGGAAAAACCAACAGACTAGGGATGTCATCAGGCTATAAAACTCAAGGAGACACATAGGAATCCATCTTGGACAATAAGTTATTCTGGATATTTATATTGGAAAATCTTTTTGTATTGTGACTGAACAAATAGAAGGCAGCGTAAAGACATGGTCGTGTTGAAAATAAcacactttaatttatttactttatgatcactaaaaaaaactgttcaataGAGTGAGCATAGTGAATGTTTGTAGTGTGGTATAAATGCAACCCAGAAATACTAGCTTTGCCATTTGATCACATGATCAGTGTGGGGTTTCATGATTTTACTGGTATTTACAAATCATCACCTTTATATGTGCATCAGAAAGAAGGTGTCCAGCAGGTTGAGGAATATAGTGAATTCAGATGTTCTTCAGGTAGTTCTGTAAGTTAATACACAGCCCAGACTGATTTTTAAagcagtagtcaacatttgaactGGATCAAAACAACTTAAAAGAATGGGAGTCCTTTAACAGTTAAAAATAACTTTGATTAGGGttacacaatatattgtttcagcatcaatatttcaatgtgtgcatccacaa
>TCONS_00031328
TATACCCTTGAGACAATGGTGGGCTTCCTGGTGCCGTATGTGATCATAGTGAGCAGTTATGTGTGTATCCTCCGCCGCCTCAGACAGACCAAGTTCAAGAGGATGATACGAAGCGAGAACCTCATTCAAGCCATTATTGTGACGTTCTGCATTTTTTGGCTTCCTTACCACATCCTTAATGTAGTGCAGGCAAGAATTTGTCATTCAGATCTTTCTGTGATAATCTATGCAATTACCTAAATGTgtgattttattttgttactgTTTTCTGGTCAGGTGATGGCAGCGCTTACACCAGAGGGAATGCCATTAAAAACACAACTAAAAAACATCTGGGAGTCCAGCCGTGCTGTTACGTCTACTCTGGCATTTATCAGTAGTTGTGCCAATCCTGTCCTATATGCATTTGCTGGACGCTCATACATTAAAGCTGATGGCCTGGCGTTCATGGCCAGACTTTTTGAGGGAACCGTTCTGGACTACAGTGCTCGGAAAAACCAACAGACTAGGGATGTCATCAGGCTATAAAACTCAAGGAGACACATAGGAATCCATCTTGGACAATAAGTTATTCTGGATATTTATATTGGAAAATCTTTTTGTATTGTGACTGAACAAATAGAAGGCAGCGTAAAGACATGGTCGTGTTGAAAATAAcacactttaatttatttactttatgatcactaaaaaaaactgttcaataGAGTGAGCATAGTGAATGTTTGTAGTGTGGTATAAATGCAACCCAGAAATACTAGCTTTGCCATTTGATCACATGATCAGTGTGGGGTTTCATGATTTTACTGGTATTTACAAATCATCACCTTTATATGTGCATCAGAAAG

Function

symbol description
ltb4r2b Enables G protein-coupled receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Located in cell surface. Orthologous to several human genes including LTB4R (leukotriene B4 receptor).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004974 leukotriene receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-658 Enables G protein-coupled receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Located in cell surface. Orthologous to several human genes including LTB4R (leukotriene B4 receptor).

Ensembl:

ensembl_id ENSDARG00000054170

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031327 False 1780 mRNA 0.42 5 37804235 37812185
TCONS_00031328 True 848 lncRNA 0.40 2 37811030 37811963

Neighbor

gene id symbol gene type direction distance location
XLOC_015730 ftr66 coding upstream 33904 37762924 ~ 37770331 (+)
XLOC_015729 MYADM coding upstream 49107 37750016 ~ 37755128 (+)
XLOC_015728 sppl2 coding upstream 301226 37480669 ~ 37503009 (+)
XLOC_015727 phc3 coding upstream 367297 37430917 ~ 37436938 (+)
XLOC_015726 phc3 coding upstream 375360 37424261 ~ 37428875 (+)
XLOC_015732 sdr39u1 coding downstream 3502 37815687 ~ 37824427 (+)
XLOC_015733 NA coding downstream 14549 37826734 ~ 37827039 (+)
XLOC_015734 AL954692.1 coding downstream 24434 37836619 ~ 37846849 (+)
XLOC_015735 cbln13 coding downstream 62586 37874771 ~ 37878304 (+)
XLOC_015736 tep1 coding downstream 84894 37897079 ~ 37906118 (+)
XLOC_015725 NA non-coding upstream 496664 37301408 ~ 37307571 (+)
XLOC_015713 dre-mir-2198 non-coding upstream 1050477 36753649 ~ 36753758 (+)
XLOC_015712 NA non-coding upstream 1060323 36742343 ~ 36743912 (+)
XLOC_015707 NA non-coding upstream 1161473 36638931 ~ 36642762 (+)
XLOC_015705 NA non-coding upstream 1239762 36552692 ~ 36564473 (+)
XLOC_015737 LO017954.1 non-coding downstream 114195 37926380 ~ 37927412 (+)
XLOC_015738 NA non-coding downstream 155800 37967985 ~ 37971044 (+)
XLOC_015740 NA non-coding downstream 162811 37974996 ~ 37990505 (+)

Expression


Co-expression Network