XLOC_015742 (dcaf8)


Basic Information

Item Value
gene id XLOC_015742
gene name dcaf8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38002717 ~ 38020603 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031342
ATGAGCGATACAGGTGGTAAATCCAGCATCCCAAATGGTGGTTCTGATGATCCAGAACCGGGAGAAGGAAGAGGGGAGGCTGAAACATCTGATGCATCTGCTGTAGCAGAGGCCCAGGCCAGTCCTGAGTCAGCGAATTTGAATTCAGCTGCAGAGGGAAGTGCGGTTGGTCAGGACAAGCTGATGGCGGACTCTGAGCAGAAGCAGGGTCCGGCTGAAGAGGAGGACACTGACAGCATGGACGGCAGTGGGCTGTACTCCCTCACCGAAGAAGGAGAACGAGAGAGTGAAGGAGGAGGGAGGGGAAAAGACGAAGGCAAGAGATCCGCCAGGAAGAGGAATCGACCCAGCGGTGGAGCCGCACATCACTCTTCCAGTTCAGATGATGACGATGAAAATGAGGAGGATGATGATGTTGAGGAGGAAGACGAGCAAGCCATGGAAGCGTGGCTAGGAGCAGACTTGTGTGACCTGAGTCGTCCTTCATGGCGTGCCATCCCTTCTCTACGGGCCCGAGAGATCGGCCGGGATTCACAGCAGTTTGTGAGGAAGGTGTGTGGGGCGCGGGGTCTGGTGCAGAGGCTGGAGTTGCAGGGACGTCTGGAGAGACACACGGGCTGTGTGAACACCCTCCACTTTAACCCCTCTGGCACCAGACTGGCTTCTGGCAGTGATGACCTCCGCGTGGTCATCTGGGACTGGGCTCGCAGAAAGGCAGAGCTGGAGTTTGACAGTGGGCATAAAAGCAATGTCTTCCAGGCAAAGTTCCTTCCACACAGCGGTGACTCCACATTGGCCATGTGTGCCCGAGATGGAcagatcagagtggcagaactGTCTGCCACACAACGATGCAAGAACACCAAAAGAGTGGCTCAGCATAAAGGTGCAGCTCATAAGcTTGCACTGGAGCCAGACTCTCCCTGCTCTTTCCTCTCTGCTGGTGAAGATGCAGTAGTGTTCGGCATTGACCTGCGTTTAGACAGACCTGCCAACAAACTGGTAGTGGTGAAGGAGGGTGAAAAGAAGGTGGGACTATACACCATTTATGTGAACCCAGCCAACACACATCACTTTGCTGTGGGTGGCAGAGATCAGTATGTCAGGATCTATGACCAGAGAAAGATAAACGAACATGATAATAACGGTGTGCTTAAGAAGTTTTGCCCCTCTCACTTGGTGTCCAGcgaatccaaaacaaatattaccTGTTTAGTGTACAGCCATGATGGCACAGAGCTGCTGGCGAGTTACAATGACGAGGACATCTACCTTTTCGACTCTAGCCACAGTGATGGAGCAGATTACCACCGGAAATACAAAGGCCACCGCAACAATGCTACAGTGAAGGGAGTTAACTTCTATGGTCCCTGTAGTGAGTTTGTTGTCAGCGGCAGTGACTGTGGACACATCTACCTGTGGGATAAGAACTCTGCTCGGGTGGTTCAGTTCATGGAGGGAGACCGAGGAGGAGTGGTGAACTGTCTGGAGCCGCATCCTCATCTTCCCGGTTTGGCCACCAGTGGTTTGGATCATGATGTGAAACTGTGGGCGCCCACTGCTGAAAATCCCACGACACTAAAGGGACTTAAAGAGGTAATGAAGAAGAACAAGCGAGAGCGTGATGAAGACAACGTTCGTCATGGTGACCAGTATGACACACAGCTCCTCTGGTTCCTGATGAGACACATGAGAAACCGAAGACCTCAACGGACCCGACGAGGCGAGGGAGGAGAAGGTGACACCGATGAATCCTGGAGCTCACCAGAATCCTCTGATGAAGAAGACGGAGGGCCAGACCATGTGCAGTGCATGTCCTcctga

Function

symbol description
dcaf8 Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in giant axonal neuropathy 2. Orthologous to human DCAF8 (DDB1 and CUL4 associated factor 8).

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-070912-578 Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in giant axonal neuropathy 2. Orthologous to human DCAF8 (DDB1 and CUL4 associated factor 8).

Ensembl:

ensembl_id ENSDARG00000000324

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031342 True 1824 mRNA 0.53 12 38002717 38020603

Neighbor

gene id symbol gene type direction distance location
XLOC_015741 NA coding upstream 2523 37999779 ~ 38000194 (+)
XLOC_015740 NA coding upstream 12212 37974996 ~ 37990505 (+)
XLOC_015739 apol1 coding upstream 27992 37971353 ~ 37974725 (+)
XLOC_015738 NA coding upstream 31673 37967985 ~ 37971044 (+)
XLOC_015737 LO017954.1 coding upstream 75305 37926380 ~ 37927412 (+)
XLOC_015743 hnrnpc coding downstream 4657 38025260 ~ 38034190 (+)
XLOC_015744 casq1a coding downstream 19254 38039857 ~ 38054482 (+)
XLOC_015745 si:rp71-1g18.1 coding downstream 34926 38055529 ~ 38066173 (+)
XLOC_015746 sall2 coding downstream 127158 38147761 ~ 38157339 (+)
XLOC_015747 mmp14b coding downstream 140715 38161318 ~ 38183641 (+)
XLOC_015734 AL954692.1 non-coding upstream 155868 37836619 ~ 37846849 (+)
XLOC_015751 NA non-coding downstream 260379 38280982 ~ 38283096 (+)
XLOC_015753 NA non-coding downstream 349932 38370535 ~ 38371944 (+)
XLOC_015755 NA non-coding downstream 395414 38416017 ~ 38422233 (+)
XLOC_015762 AL953896.1 non-coding downstream 1015579 39036182 ~ 39046184 (+)
XLOC_015763 NA non-coding downstream 1031284 39051887 ~ 39052229 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_15892502_15900203 DCAF8 coding CI01000004 null 15890373 ~ 15900852 (+)