XLOC_015743 (hnrnpc)


Basic Information

Item Value
gene id XLOC_015743
gene name hnrnpc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38025260 ~ 38034190 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031343
GCGAGTTCGCAATTGTTGCCTTTTTGCAGGCAGTGTTAGGTTATTTGGCCTTCTTAAGtaacacattttaaactttagTTAATTGCTACAACTGTGACTTCAAATCCACAGTACTGCAGTTGGAAGTGCTGTTCACTGGTTTGGTGCTGGAATTGTGATTTTGCTGCGAGGAATCTACAGTGTGACCTGCTGTCTTCAATAAACCCCAACGCCATGGATCGTGCTTCGAGTGCAAGTCAGCTGATTGCCAGCAATGTCACAAATAAAACGGACCCACGATCCCTGAACTCAAGGGTCTTCATTGGAAACCTAAACACTATGCTGGTCACCAAGGCAGACGTTGAAGCCATTTTTAGCAAATATGGCAAGATTGTTGGCTGCTCTGTGCACAAGGGTTATGCTTTTGTTCAGTTTGCCCAAGAAAGAAATGCTAGGACTGCTGTACAAGGAGAGGATGGACGGATGGTTGTCGGACAGGTGCTTGATGTTAACTTGGCAGGAGAGCCCAAACCTCACAGGTCAAAAACTACAAAGCGATCAGCTGGGGACATGTACAGCAGTAGCTCGTCTTTCGAGCTTGATTATGATTTCCAGAGAGATTACTATGACAGAATGTATTCATACCCTTCCCGTGTGCCTGCACCTCCCCCTCTCTCACGAGCCGTGATCCCATCCAAGCGTCCACGAGTCAGCACGAGCGGAGCAACCAGTCGTCGCACCAAGTCCAGCTTCGCAACTTCATCCAAGAGCAGCCAACGGACATCCTCTCGAACCCtaAAAGCAGATGATCTTCAGACTATTAAGAGAGAGCTTTCTCAAATCAAGCACAAGGTTGACTTTCTTCTGGAGAGTCTGGACAGGATGGAAAAGGATCACGGCAAGaaatctgAGGGGAAGAGTGTGAAGGCAGAAGTTGGTGAGGTTTCTCCCCTCCAGCATTCCagcaagaaagagagagagagggaagagCAAGAGATAAACGATTCAGAGGAGGAGAGAGATCTGCTGggggaggaagaagaagaagaagaagaggaagagGTTAAAAGCCAGGGTGGAGAGAATGAGAATGAGGAAGAGGAAGGAGAAGAGGAAGAGGGTGAGCATGAAGAAGGGGAAGATGATGGCGATAGCATTAATGGTGACGACTCGTAATTTTAAACGCTCTGGATACCAGACTTCCACTCAGATTTCAGCCCTTTCAGTTCTTTTGAAAAGGTTGAAGCAAGTCTTTAAAAGATCCATCTATGATGATGTAGATGTCTGTGCTCTTATCTTAGCTGACACTGCGATCACGTCAGTTTGAGTGATGtcagtttatttttaatgttagcaTGACATCTTTCAGGCTCTTGAAGTATCCCTCAACCTTGAAGAAGATAAACGTCTGTTTTCAACACAAACTATTACATTCTCCACTTAATCTTAATCATTGAGACGTGAACcagagatgtttttatttatcacTAGCAGAATATGTCTATAATGCTTTCTCTGTGTGGATCTGGCTTCTTCCTTGTTTGCCCTTTTGTCtctggtgagtttttttttttctttctgtgagcaaagttaaaatttgtattttaaaaagggggaaacTTTACAGTGACTCCTTTACAGAGTCACCGAAGCTTCCAGTGAGCATCTATGTTTGTATTTACCTGTCTTTTTATATTGCCCTGTTTCAGAATAATTCTACAGGATcatttcaataaaatattaaatt

Function

symbol description
hnrnpc Enables mRNA 3'-UTR binding activity. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleus. Orthologous to several human genes including HNRNPC (heterogeneous nuclear ribonucleoprotein C).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-2043 Enables mRNA 3'-UTR binding activity. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleus. Orthologous to several human genes including HNRNPC (heterogeneous nuclear ribonucleoprotein C).

Ensembl:

ensembl_id ENSDARG00000053810

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031343 True 1726 mRNA 0.43 9 38025260 38034190

Neighbor

gene id symbol gene type direction distance location
XLOC_015742 dcaf8 coding upstream 4657 38002717 ~ 38020603 (+)
XLOC_015741 NA coding upstream 25066 37999779 ~ 38000194 (+)
XLOC_015740 NA coding upstream 34755 37974996 ~ 37990505 (+)
XLOC_015739 apol1 coding upstream 50535 37971353 ~ 37974725 (+)
XLOC_015738 NA coding upstream 54216 37967985 ~ 37971044 (+)
XLOC_015744 casq1a coding downstream 5667 38039857 ~ 38054482 (+)
XLOC_015745 si:rp71-1g18.1 coding downstream 21339 38055529 ~ 38066173 (+)
XLOC_015746 sall2 coding downstream 113571 38147761 ~ 38157339 (+)
XLOC_015747 mmp14b coding downstream 127128 38161318 ~ 38183641 (+)
XLOC_015748 C2H14orf119 coding downstream 191237 38225427 ~ 38230008 (+)
XLOC_015737 LO017954.1 non-coding upstream 97848 37926380 ~ 37927412 (+)
XLOC_015734 AL954692.1 non-coding upstream 178411 37836619 ~ 37846849 (+)
XLOC_015751 NA non-coding downstream 246792 38280982 ~ 38283096 (+)
XLOC_015753 NA non-coding downstream 336345 38370535 ~ 38371944 (+)
XLOC_015755 NA non-coding downstream 381827 38416017 ~ 38422233 (+)
XLOC_015762 AL953896.1 non-coding downstream 1001992 39036182 ~ 39046184 (+)
XLOC_015763 NA non-coding downstream 1017697 39051887 ~ 39052229 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G34616 NA non-coding CI01000004 null 15906913 ~ 15910671 (-)