XLOC_015746 (sall2)


Basic Information

Item Value
gene id XLOC_015746
gene name sall2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38147761 ~ 38157339 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031346
TGGCAAAATGCCGGAACAGCAATGGTGATATTACGAGCCAGACACTGTACGACGTAATCTATCCTAATTTCACAAAGAGCCGTGATATATCGTCGTCTTCTGaGGAACACCCGGCAGTGAAGCCCCTCACCTCTACTCTTGAACAGAACTCTTCCTCATACTCGACACGTCAAAGCTGCAAATCTACCTTAAACCCAACTCCACCAATTGAGAGACTAAAAACATCTTCCCCGACCAGAGCCAGCCATAGTGTTGTTCACATCCCCTGTCAGCCCCTACAATTAACTCTAAATCTGAAGGGGTCTAACCTTTCCCATATTCCTGACATCCCATCCCATTTGACTAATCAGTGCATCAAGACCACTGCATCAAGTGTGTCTACTCATAAACACAGTTGCTTACTCATGGCTTCTCCAAAGTTAGGTGTGTCAGCAACCACAActtcctcttcatcatcctctgTTGCTGCTTCTCTCTGTGTGCCTCCACATCCTGGAAGCCCCAGTTCTGGGCCTCAGGGTCCCCCAAGTCCTGTTACACCCTCTTCCAGCCCAAGCACAGTCCCTTCAGCTCCGGCATGTGCACCAGTCAGTATTGCTTTTATCCTGGAAGAGCTACGTGTGCTGCAACAAAGACAAATCCATCAGATGCAGATGACTGAAGAAATATGTAGACAAGTGTTAAGACTGGGAGGAGGACCATGTGAAGTGGATTCAAAGCCATGCATACTACCATCACTGCCTCAGTTCTGTTTAAAAGGCTCTGATAACAACCCTAGACCCTCCCGACCAAAGTCATCATCTCCCCCCTCCTCAGTTGCTCCTCTTTTGGCCTGCTTCTCATCCCTGTTACCTCCTCAGTCTTCCAAACATTCCAACCCCCTCTTAAATGTCTTACGACCCCATAAAGCACAGTATGACAGTGTGGTAACAACTCCAACAAACTTCACCAGTCATACAAGTGCTTCCACATCCTCAGCAATGTCCACACCTGTTGCCTCAAACTACCCACTCACACTTTCCCTGGGCCTACCAACCCAAAAATCATCTAACACCACGGGAGCCAGTGGACACAGTGGTCTGCCCTTTCAAAACCAATCTCTACCAGTAGCTGCTGTACCTTCAGGTCCTTCACAGGATCTAAAACTCTCTGCTCAAGCTGGTTCCTCCGTCTTATCATCAGGACGTATGCAGCATGCATGCCGATTTTGTAGGAAACTCTTCAGCAGTGACTCATCCCTGCAAATACATTTGCGCTCACACACAGGAGAACGTCCTTACCAGTGTCCTGTATGTTTCAGTCGATTCACCACACGAGGAAACCTTAAGGTCCACTTCCTGCGCCATCGTGAGCAAAACCCTGAACTTTCCTTTTCATTATTTCCATGTTCATTGTTTGCATCTGTAACTGGAGGATCAATGGGAGGATCAGCACAAACTCAAACGGTCACCTCTACCAATACAAACACTACTCAAAGGCATCAGAAACAGCAAGATGATGACCTGTGTGTTGACAGTCTGGAGGGTGCTACTGCATCAACACGTGCTACAGCTTCATCTCTGCCTCCCAGTATTGATTTGGCCCTGTTGACCACTGCACACTCTCTCCTCCAGCTCAATCGTGCTGCTGCTGCGGCGGCTGCTGCTGCAGCCTCTACATCCACTACCTCTTCAATCACATCCTCATCATCTTCCTCTCTAGCCTCCACTCTTCTTTCCTCTCCTGCCTCATCAACCTCCTCCATTGCTGGTGTGTATAAAGGAGTAAAACAGCAGCGCTTTGATGAAAACACCCCACCTATACCCACTCTGCTCCCCCACACTGCTTATTCACAGCTTGCTAACTTACCTAAAATCTTCTTCCCAGCTTCTTCCTCTCACCATCACCTAGGTCATGGGTTTCTCAGGCCAACAAGTCCAGCTGGATCCTTCCTGCCATCTCCACAACACCACATTACATTTCCATTCACCTCGTCATCCACTGCCCCATCCATCTCAACTCCAACATCGGACACATCAAAGCTGCAGAGACTAGTGGAAAAGTTAGAGAAAGAACCACATGGTCAGACAAACTGGGAATCATCCATCGGGGAGACATCTACCAGCGGCAATAGTGTATCTGGAACATTAACGTATAGCAGCAGTGGCTTAATGAGCACAAGTACATATAGTACGAATGTTGTCACCTCACTCCCATCGTCTACAGTCCAAATACCCTCATCCCTCTTCAGCAAGGAGTCACCTTACATGGGACTTATGAACTCTGCTGGGACACTTGCCCCTAACCAGTGTAGCGTGTGTCTGCGTGTACTAAGCTGCCCAAGAGCATTACGTTTGCATCAGGCTACTCATTTAGGTGAGCGACCCTTCCCCTGCAAACTATGTGGTCGTTCTTTCTCAACTAAAGGAAGCCTTCGAGCACACCTTGCCACTCATCGAGCACGTCCACCAAACAGTCGTGCCCAGAATTCTTGTCCTTTATGCCAGCGGAAGTTTACCAATGCCCTTGTGTTACAACATCATATCCGAATGCATTTAGGAGGACAGCTACCACCAGAGCACATGCCCGATACTTCAACAGAATGTGATTCACAGTCTCACTCCCAGTCCATTGAGCCCTCTGGCTCAGAGAATACTCCTAGCACTGTGGATGTTCAGTTGCTACATGCTGATCGACAAACCATCTCAGATTCCAGCCATACTGAATCACTCGCTGTCAGTATTGCACCCACAGTTTGTCCTGTAACCTCTAGTCTACCTGCTTCACGTAGCTCAGGTCCTATACCAACTTTCGATCTAAGCCCTGGCCCCTCTCTGAATTTAACACCCCAGTCACCTCCAACATTTATAGCTGATCCTCCTGAGCTCTCTCTCAACATACCTTCCCCAGTAGAATCTGCAGCTTCCCTCTTCCCCCCAACCTCTCAATCAGCATCAACATCTGGTACTACTGCCAATGATGAAGTATGTTTTGAACTGTCCAGCAACACTGCCTACTTGGGAGACATTTCAAGCACATCTGCTCTGATGAATACCAGTCCACAAGAAAATGACTGTGAAGTCAGTGAAAATAGATCTCTCTCAGCTGTCCCTTGCTCTGGATCAAGATCAAATTTGGAGGATCTTCTTAGCATACAAGCTCATAATGCATCCAGAGCCTCTCGGACACATCCCGTTTCACCGCCATCTTCTCCCTTAGTGCTGGGATCTGAGAGTGTGTCTTCTCAAAATGTACGTCTAGAGGAgcctgaccaaagtcttgtccAAACATCCACATCACTTCCACAAGAGTTTCCCAATGAACAAAAAACTGAAGATAAAGGTCGCAAAACACCAAAGAATGGTCAAAAGATACCGCCAGAGTTGAGTACTGATCAAGAAATGCTATCAGACACTGTAACCAAAACAAGTGAGGATGCAGTTGAGTCTGAGGAGGCGGACACACGTGTGCAGAAGATTACAAAGGATACTCACTATAGCTCGGATGCAATGGATAAAGCAGACCTCAATGATGCAACTGCAACTGAAATGGACAGAACAGAACCTACTGTATGCATTTCCCTTACTCCCAGTCTTCCACCTCCCATGCCAGAGAAAAAAATCTACCACTGTTCTGAATGTGGAAAAGAGTATGCAAGTCGCAGTGGACTCAAAGGACATATGAAGCACCATGGAGGAGTTGTCAAGACACCTCGAGCTCCTGCTAGGACCAAGGGACCAGAGAAAGTCATGCATAATGACCGACCACAATCTCACAACCTTGCAACCTACTTGCCACCAGGGCATGAGTGAGTTTCTTGATTCAACCTATGTGAAAACTTCAAGCATCAGAAAGCTCACCAGACGACCCCGTTAAATTTTTAGATCAATCTAATAGGTGACAAAAGGGAAGAACCTGAAGGATATTATGAACCACGATTTTAATTGCTCcccaaaaacaga
>TCONS_00031347
ATGGCTTCTCCAAAGTTAGGTGTGTCAGCAACCACAActtcctcttcatcatcctctgTTGCTGCTTCTCTCTGTGTGCCTCCACATCCTGGAAGCCCCAGTTCTGGGCCTCAGGGTCCCCCAAGTCCTGTTACACCCTCTTCCAGCCCAAGCACAGTCCCTTCAGCTCCGGCATGTGCACCAGTCAGTATTGCTTTTATCCTGGAAGAGCTACGTGTGCTGCAACAAAGACAAATCCATCAGATGCAGATGACTGAAGAAATATGTAGACAAGTGTTAAGACTGGGAGGAGGACCATGTGAAGTGGATTCAAAGCCATGCATACTACCATCACTGCCTCAGTTCTGTTTAAAAGGCTCTGATAACAACCCTAGACCCTCCCGACCAAAGTCATCATCTCCCCCCTCCTCAGTTGCTCCTCTTTTGGCCTGCTTCTCATCCCTGTTACCTCCTCAGTCTTCCAAACATTCCAACCCCCTCTTAAATGTCTTACGACCCCATAAAGCACAGTATGACAGTGTGGTAACAACTCCAACAAACTTCACCAGTCATACAAGTGCTTCCACATCCTCAGCAATGTCCACACCTGTTGCCTCAAACTACCCACTCACACTTTCCCTGGGCCTACCAACCCAAAAATCATCTAACACCACGGGAGCCAGTGGACACAGTGGTCTGCCCTTTCAAAACCAATCTCTACCAGTAGCTGCTGTACCTTCAGGTCCTTCACAGGATCTAAAACTCTCTGCTCAAGCTGGTTCCTCCGTCTTATCATCAGGACGTATGCAGCATGCATGCCGATTTTGTAGGAAACTCTTCAGCAGTGACTCATCCCTGCAAATACATTTGCGCTCACACACAGGAGAACGTCCTTACCAGTGTCCTGTATGTTTCAGTCGATTCACCACACGAGGAAACCTTAAGGTCCACTTCCTGCGCCATCGTGAGCAAAACCCTGAACTTTCCTTTTCATTATTTCCATGTTCATTGTTTGCATCTGTAACTGGAGGATCAATGGGAGGATCAGCACAAACTCAAACGGTCACCTCTACCAATACAAACACTACTCAAAGGCATCAGAAACAGCAAGATGATGACCTGTGTGTTGACAGTCTGGAGGGTGCTACTGCATCAACACGTGCTACAGCTTCATCTCTGCCTCCCAGTATTGATTTGGCCCTGTTGACCACTGCACACTCTCTCCTCCAGCTCAATCGTGCTGCTGCTGCGGCGGCTGCTGCTGCAGCCTCTACATCCACTACCTCTTCAATCACATCCTCATCATCTTCCTCTCTAGCCTCCACTCTTCTTTCCTCTCCTGCCTCATCAACCTCCTCCATTGCTGGTGTGTATAAAGGAGTAAAACAGCAGCGCTTTGATGAAAACACCCCACCTATACCCACTCTGCTCCCCCACACTGCTTATTCACAGCTTGCTAACTTACCTAAAATCTTCTTCCCAGCTTCTTCCTCTCACCATCACCTAGGTCATGGGTTTCTCAGGCCAACAAGTCCAGCTGGATCCTTCCTGCCATCTCCACAACACCACATTACATTTCCATTCACCTCGTCATCCACTGCCCCATCCATCTCAACTCCAACATCGGACACATCAAAGCTGCAGAGACTAGTGGAAAAGTTAGAGAAAGAACCACATGGTCAGACAAACTGGGAATCATCCATCGGGGAGACATCTACCAGCGGCAATAGTGTATCTGGAACATTAACGTATAGCAGCAGTGGCTTAATGAGCACAAGTACATATAGTACGAATGTTGTCACCTCACTCCCATCGTCTACAGTCCAAATACCCTCATCCCTCTTCAGCAAGGAGTCACCTTACATGGGACTTATGAACTCTGCTGGGACACTTGCCCCTAACCAGTGTAGCGTGTGTCTGCGTGTACTAAGCTGCCCAAGAGCATTACGTTTGCATCAGGCTACTCATTTAGGTGAGCGACCCTTCCCCTGCAAACTATGTGGTCGTTCTTTCTCAACTAAAGGAAGCCTTCGAGCACACCTTGCCACTCATCGAGCACGTCCACCAAACAGTCGTGCCCAGAATTCTTGTCCTTTATGCCAGCGGAAGTTTACCAATGCCCTTGTGTTACAACATCATATCCGAATGCATTTAGGAGGACAGCTACCACCAGAGCACATGCCCGATACTTCAACAGAATGTGATTCACAGTCTCACTCCCAGTCCATTGAGCCCTCTGGCTCAGAGAATACTCCTAGCACTGTGGATGTTCAGTTGCTACATGCTGATCGACAAACCATCTCAGATTCCAGCCATACTGAATCACTCGCTGTCAGTATTGCACCCACAGTTTGTCCTGTAACCTCTAGTCTACCTGCTTCACGTAGCTCAGGTCCTATACCAACTTTCGATCTAAGCCCTGGCCCCTCTCTGAATTTAACACCCCAGTCACCTCCAACATTTATAGCTGATCCTCCTGAGCTCTCTCTCAACATACCTTCCCCAGTAGAATCTGCAGCTTCCCTCTTCCCCCCAACCTCTCAATCAGCATCAACATCTGGTACTACTGCCAATGATGAAGTATGTTTTGAACTGTCCAGCAACACTGCCTACTTGGGAGACATTTCAAGCACATCTGCTCTGATGAATACCAGTCCACAAGAAAATGACTGTGAAGTCAGTGAAAATAGATCTCTCTCAGCTGTCCCTTGCTCTGGATCAAGATCAAATTTGGAGGATCTTCTTAGCATACAAGCTCATAATGCATCCAGAGCCTCTCGGACACATCCCGTTTCACCGCCATCTTCTCCCTTAGTGCTGGGATCTGAGAGTGTGTCTTCTCAAAATGTACGTCTAGAGGAgcctgaccaaagtcttgtccAAACATCCACATCACTTCCACAAGAGTTTCCCAATGAACAAAAAACTGAAGATAAAGGTCGCAAAACACCAAAGAATGGTCAAAAGATACCGCCAGAGTTGAGTACTGATCAAGAAATGCTATCAGACACTGTAACCAAAACAAGTGAGGATGCAGTTGAGTCTGAGGAGGCGGACACACGTGTGCAGAAGATTACAAAGGATACTCACTATAGCTCGGATGCAATGGATAAAGCAGACCTCAATGATGCAACTGCAACTGAAATGGACAGAACAGAACCTACTGTATGCATTTCCCTTACTCCCAGTCTTCCACCTCCCATGCCAGAGAAAAAAATCTACCACTGTTCTGAATGTGGAAAAGAGTATGCAAGTCGCAGTGGACTCAAAGGACATATGAAGCACCATGGAGGAGTTGTCAAGACACCTCGAGCTCCTGCTAGGACCAAGGGACCAGAGAAAGTCATGCATAATGACCGACCACAATCTCACAACCTTGCAACCTACTTGCCACCAGGGCATGAGTGAGTTTCTTGATTCAACCTATGTGAAAACTTCAAGCATCAGAAAGCTCACCAGACGACCCCGTTAAATTTTTAGATCAATCTAATAGGTGACAAAAGGGAAGAACCTGAAGGATATTATGAACCACGATTTTAATTGCTCcccaaaaacagaagaaaaagaaaaacacactcaCGGTAAACACATAAAATCACTTCTTGGTTTAAAAAAATCAGATCTTTAACACAGAtcttttatattaaaatacaagtattgtgtattttaatatatgtaaTGATGCCTAAATATATCTTATAGTACTTCCTTAAGTATTAGGTGATGTTCTTTTGATGAATGTAAATTGTTTTGTCTGGATGAGGTTGCCATGATTGTTTTGTAGACTTTTCTAAAGGTGAAGAACTGAATAGAGCTAACGATTTGATAATAGTTTTGAGTGAGGAACAGAGCAAAATTTAAGAAGCCAATGATGAAATGATGGATCAGTTCACAAAGATGTATTGTTCGGGTGTGCTATTTTTTTACAACAGCACAAAATGTGAAGATTGTAATCAAATCTTTAAGCGATGGTAAAGCGAGGGTGTGTGTTTAAAAACTAGGGATGTCCTGATAAGGTTTTTTTGCCCccgagtctgagtcatttgattttaaggATCTACCGATACCAAATCCTGATCCGTTACTTctgtaatacataaaaaagatgaGTGGAAAAACAGATCCAGTATGCtccttattttttatgtaattcatcttattttaacattcaacaactcttgTTAAAAAACAGAgaacttctgtgaggtagcttgaacaatcaagtaataaagaacataaattcttcacttttggactttagtgcaacagtaaacataataaaaatctaatataaaaataaatagcacCTCAACctaaaatacccagcaggcaatcccaagtttacatatctcacagtttgctatggtaATGTTGTCTACATCAACTTTATAATGCCTCTAGtccgcagacatactcgcgcaTTCCGCATTTACTTTGCGGGCATtcaaccaatagcgtctctgcaacaaaagTGACGTCATGCCGcacatgttgctgtttctgtgtgaaagaagtctaactctgtgccaccgcataactatagatgtgttaaaataataatcagaATCGGAAGGCTACGTCTGAATCCGTGTGATCGGGCCAGATTTACGATCATGTtttcggatctggacatccctattaAAAACACACTAATATACCAAAAACAGATTCTGAAAAAGTATTTATTTGGTCAAACAATGTGTTAAACTATGTCAATACCCTGCTGCATTATGTTTTGGAGGGCATCCATGCACAGTCCTATCAACCTTTGTCAAACAGTTCTTATAAATTTTCTTAATGAGGTCAAATGTTCAGCAAAATACCCTACCATATACCAGATACTAGACAGTACAGCTGGAATATGCGTGTAGAATTGTTTTCCAAGAGCAAACCAAGTGTTCCTGACAAGCTGATATTTAAAACTCTTGTTAAAATTGACATTAGATAAATATTCTTGTACTAATGCATTCTTTACTTGTACTAAATCTCTTTCTTTTAACACTTGGGAAGCACCGAAACACCAAACTGTAAATATGACCTGTCAACTTGTGTCCATTGTGTCCATGTTTGTCCAGCTGTACAGTACTAGATAATATACTGCTCTTAACACCAACTAGAGTCGGGTAAGATTGTTTAACAAGCCTGTATGTTAGTCAGTGTAAGTTCTTGTTACTTTAATATTGTCAGTGTAGCTATTGAAAAAGACTGATTCTGAGATGAACCACTATCTAGCTAAAAGAAAAATAACACTTTCTATATTTCTTGGTGGAAATGTTTGTTTCTATGGTGGTGTTTGTTCTTTGTCTGGATACTTTTACATGTATCTATCTTCCATGGAAATGAATAATTGGGTGTACGAGTCTGACTGTGAGTTGTAATTTCATGGTACAGctaaaaggaaataaaaatcagTGTATTCACGGCAAGACCCAGAACGAGCAGTTCTTTCAGATCGCTCACACtctttgttgttgtctttttgttTAACAGTATAAATCTCATCTACAGTGATGTTACTCTTCCTTGGTGGTCTGAGGGAACAGTTTTCTTCACATACAGGCATCCCTAATCCGTTCACTCCCTAACACAATCAAACTCCTCCGCACCGCTTCTGTGTGTGCCACATCAAGCGCAGTGAGGGAGAAACTGGAGGAAGCGTTGACAATCTGTCTGAGGACTGGCCTCTAATCTCTTGCACCATGACAACCATGCAGAGACATAAGACCTAAATAAAGTATGGTCTATGTGTTTGTTTGTAGGGCTATGTGAATATTGGGTGTAATGTTGCACTTAAACTGGTTAAGccaaaaggttaaggtaactcaaaccatttaagggaaaccgattgcaacaaaccatttaagttcaaaaactaatcctaatgagtactgcaaacttaatctatttgagtaaacgaagaaGTTTGAGTACTGAAAAACCC

Function

symbol description
sall2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in central nervous system; neural tube; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in coloboma. Orthologous to human SALL2 (spalt like transcription factor 2).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030829-32 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in central nervous system; neural tube; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in coloboma. Orthologous to human SALL2 (spalt like transcription factor 2).

Ensembl:

ensembl_id ENSDARG00000075116

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031346 False 3941 mRNA 0.47 3 38147761 38154956
TCONS_00031347 True 5920 mRNA 0.43 2 38151308 38157339

Neighbor

gene id symbol gene type direction distance location
XLOC_015745 si:rp71-1g18.1 coding upstream 81588 38055529 ~ 38066173 (+)
XLOC_015744 casq1a coding upstream 93279 38039857 ~ 38054482 (+)
XLOC_015743 hnrnpc coding upstream 113571 38025260 ~ 38034190 (+)
XLOC_015742 dcaf8 coding upstream 127158 38002717 ~ 38020603 (+)
XLOC_015741 NA coding upstream 147567 37999779 ~ 38000194 (+)
XLOC_015747 mmp14b coding downstream 3979 38161318 ~ 38183641 (+)
XLOC_015748 C2H14orf119 coding downstream 68088 38225427 ~ 38230008 (+)
XLOC_015749 dhrs1 coding downstream 104409 38261748 ~ 38269675 (+)
XLOC_015750 homeza coding downstream 114053 38271392 ~ 38275658 (+)
XLOC_015751 NA coding downstream 123643 38280982 ~ 38283096 (+)
XLOC_015740 NA non-coding upstream 157256 37974996 ~ 37990505 (+)
XLOC_015738 NA non-coding upstream 176717 37967985 ~ 37971044 (+)
XLOC_015737 LO017954.1 non-coding upstream 220349 37926380 ~ 37927412 (+)
XLOC_015734 AL954692.1 non-coding upstream 300912 37836619 ~ 37846849 (+)
XLOC_015753 NA non-coding downstream 213196 38370535 ~ 38371944 (+)
XLOC_015755 NA non-coding downstream 258678 38416017 ~ 38422233 (+)
XLOC_015762 AL953896.1 non-coding downstream 878843 39036182 ~ 39046184 (+)
XLOC_015763 NA non-coding downstream 894548 39051887 ~ 39052229 (+)

Expression


Co-expression Network