XLOC_015754 (psmb5)


Basic Information

Item Value
gene id XLOC_015754
gene name psmb5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38373272 ~ 38392575 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031358
GTTTTCTGAAACATGGCGCTGTCTAGTATTTTGCGGAATGAGTCTGCGGATTTTTCAGATCCAATTGACCGGTCTTTTGCTCACGGATGTGGCCTAAACCAGACAAATTTCGGCTTTGGAGCCGCTCTGGGTGACAGCCCAAACTTCGCCGTGAAGACTCTGGGTGAAGACGATGAACCGGAGAGAAAAATCGAGTTTCTTCACGGCACGACCACCTTAGCATTCAAATTTCAGCATGGTGTGATTGTGGCTGTGGATTCTAGAGCGACCGCGGGCGCCTACATTGCTTCACAGACAGTGAAGAAGGTGATTGAAATCAACCCGTACCTGCTTGGCACCATGGCAGGAGGGGCAGCAGATTGCAGCTTCTGGGAGCGACTGCTGGCCAGGCAGTGTCGCATTTATGAGCTCCGCAACAAAGAGCGCATTTCAGTGGCAGCTGCATCCAAACTGCTGGCTAACATGGTGTATCAGTACAAAGGCATGGGCCTCAGCATGGGCACGATGGTCTGCGGCTGGGACAAAAGAGGGCCAGGACTCTACTATGTGGATTCAGAGGGCAACCGTGTATGCGGAGATTTGTTCGCTGTTGGTTCGGGTTCCATGTATGCTTACGGCGTCGTCGACAGCGGCCTTCGATACGACTTGACCATAGATGAGGCTTGTGACCTGGGCCGCCGTGCCATATACCAAGCTACTTACCGTGACGCCTACAGTGGAGGCCAAGTCAACCTCTACCGCGTCCACAGCGAGGGCTGGGAAAGAGTCTCACAGGAAGACGTGCTTCAGTTGCACCAAAAATACCAGAGTGAGAAAGCTTAGAGCGAAGGGTAGAGGAGATGAGGGAAGAGCCCACAGCAGTTGAGTTTCAAAAGAAAGGGTAAGACCAGTCAGATGAGGAATGAATAGCAGATTATTGATATGACCTGAAAGGCACTTGAGTTAATCAAATCCGCTTCTATGTAAGTGTTTTGTAAGAGCAGGCTCTTCTGCATAAGGGAACATTAGCAAAGCTGTCTCTCTTCTTCTCAAAGTTATTTCCGTTATTTTTCTCACCCATGTTATTTGTTGAGTTTTCATCCACAGTTTCAGTAGTATTACAACCCTAGCCGGTCTAATTGCAATTGTTgtttatgataataaaataagGGGGGGTGCTGTCTCCCAATGGACACTAATGACAAGCCAATACTCTAGTAGTTGGCCCACTCTCACTGAGTGGGAGTGGGCTTCTGTTCTTCTCTTCTCACATGTATCTGCTGTTTCCACAGTTACTAAACCTACTCTCAATAAaaccttggatttttt

Function

symbol description
psmb5 Predicted to enable endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human PSMB5 (proteasome 20S subunit beta 5).

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko01002 Peptidases and inhibitors
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-990415-215 Predicted to enable endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human PSMB5 (proteasome 20S subunit beta 5).

Ensembl:

ensembl_id ENSDARG00000075445

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031358 True 1308 mRNA 0.48 3 38373272 38392575

Neighbor

gene id symbol gene type direction distance location
XLOC_015753 NA coding upstream 1328 38370535 ~ 38371944 (+)
XLOC_015752 nedd8l coding upstream 83521 38288308 ~ 38289751 (+)
XLOC_015751 NA coding upstream 90176 38280982 ~ 38283096 (+)
XLOC_015750 homeza coding upstream 97614 38271392 ~ 38275658 (+)
XLOC_015749 dhrs1 coding upstream 103597 38261748 ~ 38269675 (+)
XLOC_015755 NA coding downstream 23442 38416017 ~ 38422233 (+)
XLOC_015756 cdh24b coding downstream 161685 38554260 ~ 38709083 (+)
XLOC_015757 FQ377660.1 coding downstream 339121 38731696 ~ 38741768 (+)
XLOC_015758 carmil3 coding downstream 349763 38742338 ~ 38890677 (+)
XLOC_015759 si:ch211-119o8.4 coding downstream 500056 38892631 ~ 38909401 (+)
XLOC_015741 NA non-coding upstream 373078 37999779 ~ 38000194 (+)
XLOC_015740 NA non-coding upstream 382767 37974996 ~ 37990505 (+)
XLOC_015738 NA non-coding upstream 402228 37967985 ~ 37971044 (+)
XLOC_015762 AL953896.1 non-coding downstream 643607 39036182 ~ 39046184 (+)
XLOC_015763 NA non-coding downstream 659312 39051887 ~ 39052229 (+)
XLOC_015764 CU179756.1 non-coding downstream 667060 39059635 ~ 39070308 (+)
XLOC_015767 NA non-coding downstream 1393172 39785747 ~ 39792446 (+)

Expression

Expression of XLOC_015754(psmb5) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Expression of XLOC_015754(psmb5) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_16221780_16232426 PSMB5 coding CI01000004 null 16221780 ~ 16232940 (+)
rainbow trout (Oncorhynchus mykiss) G2218316 LOC106584215 non-coding NC_050570.1 CM025857.1 27186575 ~ 27196779 (+)