XLOC_015754 (psmb5)


Basic Information

Item Value
gene id XLOC_015754
gene name psmb5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38373272 ~ 38392575 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031358
GTTTTCTGAAACATGGCGCTGTCTAGTATTTTGCGGAATGAGTCTGCGGATTTTTCAGATCCAATTGACCGGTCTTTTGCTCACGGATGTGGCCTAAACCAGACAAATTTCGGCTTTGGAGCCGCTCTGGGTGACAGCCCAAACTTCGCCGTGAAGACTCTGGGTGAAGACGATGAACCGGAGAGAAAAATCGAGTTTCTTCACGGCACGACCACCTTAGCATTCAAATTTCAGCATGGTGTGATTGTGGCTGTGGATTCTAGAGCGACCGCGGGCGCCTACATTGCTTCACAGACAGTGAAGAAGGTGATTGAAATCAACCCGTACCTGCTTGGCACCATGGCAGGAGGGGCAGCAGATTGCAGCTTCTGGGAGCGACTGCTGGCCAGGCAGTGTCGCATTTATGAGCTCCGCAACAAAGAGCGCATTTCAGTGGCAGCTGCATCCAAACTGCTGGCTAACATGGTGTATCAGTACAAAGGCATGGGCCTCAGCATGGGCACGATGGTCTGCGGCTGGGACAAAAGAGGGCCAGGACTCTACTATGTGGATTCAGAGGGCAACCGTGTATGCGGAGATTTGTTCGCTGTTGGTTCGGGTTCCATGTATGCTTACGGCGTCGTCGACAGCGGCCTTCGATACGACTTGACCATAGATGAGGCTTGTGACCTGGGCCGCCGTGCCATATACCAAGCTACTTACCGTGACGCCTACAGTGGAGGCCAAGTCAACCTCTACCGCGTCCACAGCGAGGGCTGGGAAAGAGTCTCACAGGAAGACGTGCTTCAGTTGCACCAAAAATACCAGAGTGAGAAAGCTTAGAGCGAAGGGTAGAGGAGATGAGGGAAGAGCCCACAGCAGTTGAGTTTCAAAAGAAAGGGTAAGACCAGTCAGATGAGGAATGAATAGCAGATTATTGATATGACCTGAAAGGCACTTGAGTTAATCAAATCCGCTTCTATGTAAGTGTTTTGTAAGAGCAGGCTCTTCTGCATAAGGGAACATTAGCAAAGCTGTCTCTCTTCTTCTCAAAGTTATTTCCGTTATTTTTCTCACCCATGTTATTTGTTGAGTTTTCATCCACAGTTTCAGTAGTATTACAACCCTAGCCGGTCTAATTGCAATTGTTgtttatgataataaaataagGGGGGGTGCTGTCTCCCAATGGACACTAATGACAAGCCAATACTCTAGTAGTTGGCCCACTCTCACTGAGTGGGAGTGGGCTTCTGTTCTTCTCTTCTCACATGTATCTGCTGTTTCCACAGTTACTAAACCTACTCTCAATAAaaccttggatttttt

Function

symbol description
psmb5 Predicted to enable endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human PSMB5 (proteasome 20S subunit beta 5).

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko01002 Peptidases and inhibitors
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-990415-215 Predicted to enable endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human PSMB5 (proteasome 20S subunit beta 5).

Ensembl:

ensembl_id ENSDARG00000075445

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031358 True 1308 mRNA 0.48 3 38373272 38392575

Neighbor

gene id symbol gene type direction distance location
XLOC_015753 NA coding upstream 1328 38370535 ~ 38371944 (+)
XLOC_015752 nedd8l coding upstream 83521 38288308 ~ 38289751 (+)
XLOC_015751 NA coding upstream 90176 38280982 ~ 38283096 (+)
XLOC_015750 homeza coding upstream 97614 38271392 ~ 38275658 (+)
XLOC_015749 dhrs1 coding upstream 103597 38261748 ~ 38269675 (+)
XLOC_015755 NA coding downstream 23442 38416017 ~ 38422233 (+)
XLOC_015756 cdh24b coding downstream 161685 38554260 ~ 38709083 (+)
XLOC_015757 FQ377660.1 coding downstream 339121 38731696 ~ 38741768 (+)
XLOC_015758 carmil3 coding downstream 349763 38742338 ~ 38890677 (+)
XLOC_015759 si:ch211-119o8.4 coding downstream 500056 38892631 ~ 38909401 (+)
XLOC_015741 NA non-coding upstream 373078 37999779 ~ 38000194 (+)
XLOC_015740 NA non-coding upstream 382767 37974996 ~ 37990505 (+)
XLOC_015738 NA non-coding upstream 402228 37967985 ~ 37971044 (+)
XLOC_015762 AL953896.1 non-coding downstream 643607 39036182 ~ 39046184 (+)
XLOC_015763 NA non-coding downstream 659312 39051887 ~ 39052229 (+)
XLOC_015764 CU179756.1 non-coding downstream 667060 39059635 ~ 39070308 (+)
XLOC_015767 NA non-coding downstream 1393172 39785747 ~ 39792446 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_16221780_16232426 PSMB5 coding CI01000004 null 16221780 ~ 16232940 (+)
rainbow trout (Oncorhynchus mykiss) G2218316 LOC106584215 non-coding NC_050570.1 CM025857.1 27186575 ~ 27196779 (+)