XLOC_015758 (carmil3)


Basic Information

Item Value
gene id XLOC_015758
gene name carmil3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38742338 ~ 38890677 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031363
CCTCTGCTCAGTATGATATGTTTATAGGCATCGGCTGAGGCAGCGCGAGCGTTATAGCGGCTCCTGCTTGAATAGGAAGAGGAAAGGGGCGCTGGACGTCATGGCATCCAAAGACACCGTCGCGACCGCTTTTCTCACCGTGAGTCGGGAAATGACAGAGAGCATCAGACGAGTTATTGACAAGACATCAATCAAGTTAGTGAGAGCTATCAAAGCAGAGAACAAGAGTGGCAAATCAGAGGATCGGATTCTGGTTTTGGCAACATGGCGGATGTACCTCATGGCCCCCAAGATACCAACCAAGGTGGAACAAACCTTCAACTTCCTGGAGATTCGGGCAATGAACACCCACCCAGAAAATCAGGTTGTCATAGAAACAGACAAGTCCACATATTCGCTGAGGCTGCAGTCTAACGAGCACCTGGATCAGATGATTAACCACATCAACTTTGCTCTCTCGCGGATCTTCAATAACTCCATATACACACCCTCCATCTTTCACGCAGATGGAGACGTTGCTGACGGAAATCGCAAATTTTCTCCAAGCTCTGAGAGTTCAGTGGAGACGCAAAGGGCATGTGGGGGCTTTTCGGAGACCTACGCAGCTCtgtgtgattataatggaattacCTGCAAAGAGGAAGTGCAGTGGGATGTGGACACCATCTATCACTCACAGGACAACAGAGAGTTTAACCTGTTGGACTTCAGTCATCTGGAAAGCGGGGACCTTGCTGTGATTGTAGCGGCCATGGCGTATAACTCGTGGTTCATCAAACTCTATTGCAAAGACTTTCGCATTAGTTCAGAGGTCGTGGAGCAGATTCTGCACACTGTCAGTAAATCCAGCAGTCTGGAGGAGCTCACGCTGGAAAATGTGGGCCTTAAAGCAGATTTCCCACAGAAAATGGCCACTGCCCTGTCAGAAAACCCAGCATCAGTCATACACTCCATTAACTTGGCCCACAATACACTGGACAACCAAGGGGTGTCGAACCTCATCCAGCAGGTTTGCAGGCTCAGTAAAGGCCTACGTCTGCTCAACCTCTCCAAGACGTCACTCTCTTCAAAGGGTGTCACGTCTCTTTCGCAGGCCTTGTGCTCTAGTGATGACTACTCCAATTCTCTTCTTCATCTGGATCTGAGTAAGAACCCTGGCATTCTGTCTGGAGAAGATGCAACGAATCTGTACCTGTTTCTGGCACAGCCGAACTGCCTGGTGCATTTGGATCTGTCAGGCACTGACTGTACCGTTGACTCTTTATTTGGAGCTCTGCTGCGGGGATGCTGTGCCGATCTCTCCTACTTGAACCTGTCGAAAAACTCCTTCTCTCACAGGAAAGTGAGAGAGACACTTCCTTCCTTCCGTCAGTTCTTCAGTTCAGCGTTCAGCCTCACTCATATCAGCCTGGCCTCTATGAAGATGCCTCCCGACGTGCTGAGGGCTCTGTTCCTCGGGCTTTCATCCAATCCTCACATCACTGACCTGCACCTGGACATCAGCGGCTGTGAGCTCAGGTCTGCTGGAGCAGGGATAATACAGGACCTTTTCCCCAGAGTCTCCTGCATCAGCACACTGGACATCTCAGACAACGGGCTGGATGGGGATCTGCTGTGTGTCATTCCTGCCTTCTCCAGACACCCGTCCCTAAAACACCTGCTCCTGGGCAAGAACTTTAACATCAAGGGCAGGGTTTTAGATGAAGTCCTGCAGAAACTGGTGCATCTTGTCCAGGAGGAAGAGTGTGCCCTGCAGAGTTTGTCTCTGGCCGACTCCAGGCTGCGTTCGAGGGGCACGGTGCTGGTAAACGCTCTAGGCAGCAATGCCTGTCTGAAAAAGGTGGATCTGAGTGGGAACGGACTTGATGACACAGGAGCGAGGATGCTCAGTAAAGCCCTTCAGATCAACACTACTCTCAGaaGTGTGACATGGGATCGAAATAACACAAGTGCTACGGGTTTCCAAGATGTGGCTCGAGCCCTGGAACATAACTTCACCCTGCAGTACATGCCTATCCCGCTCAGTGATGTCACACAGGCGTACCGCAGCTCCCCCGACAGGACAGAACAGGCACTGACCAAGATCCAGCGTGCTCTGTTGAGGAATAACCAGACTCAGCGTTTCTCTCAGAAACAGGCTCTTCGGCTGCATCAGGGCCTGGTAACTAGTACTGCAGAACAGGTGATGGAGCGTCTGTGTGTTCGCGTGcagcagcaggtgtgtgtgttgaGAGGAACGGGTGAAGGTGAAGAGCTCCAGGCTGCCAGACAGGTCCTCAAGGAGGCCAGGAACTCTCGAGCCCTGTACCCCTCGCTGTGTGAACTGGCCCATGTGTTGTCCGTAGACGGGCCGGTGAGACAGAGACTAGACTCTCTGGCAGGAGAACTTGCCAAAGCTGCTGATAAAGAACTACAGGTCATCGTGGACTCCATGGTGTCTCTGTGTCGGGAGCTGTGTCCACTTTCTTGTGCCGCAGCAGAGTGTCTTTCTCCACCACTGTCCTCCATCTCTGAGCGTGTGTCCATCCCTCGTTCATCCATCCGCACCGCTCTGATGGAGAGAGCGGCGCAAGACATCAACAGAGCTCTGGAAGAGGTGAAGCTGTCTGTCGTCTCGTATCTCACCAACTCCATAGTGGACCAGATCCTGCAGGAGCTTTACGCCACACACAAAACCCTGCTCCGGCAGGTTTCCCAGATGAGACGGCTGGAGGACGGAGGGACGGCCAGACGGGCTCACAGGCACGCAGACATGCTGGACGTAGTGGAGGACGACTTCGGCATCAGCATAGACACGATCGCCATTAAGAAACGCAGCTCGAGGACCAGACGCATTCGCCCTGTGTCCAACAGACTCAGTCTAGGTGAAGACCCTAACTCCTCACCTTTAGTTTCCACTCCTCAGTCATCTGCTCCTCTTTCACGCTCAGCCTCATGGGAAGGTCTGGCCACACTGCCCACTCAGGGTTCACCGCTGCGTCATGTGACCCACGTCAGGCCCCGTCCACCAAGAAGACACAGGGCTGCGCATGCTCCATTTGAGACGCACTGCTCGGAGAATGGTGGAGTATCTCTATTGGATGATGGACTGCCCGACTTTTACACCAAGAGAGTTTTACCAGACAGTCAGCTGTCGTCTCACCATCACGCTCAGGCTTTGAGAAGAAAGAAACGACGCAGTGTGCTGTCAATCTTTTCGGGATTCAGGAAGAACCGAAACTCTACCATATCCTATCAGGAGCCTGATCCTACAGGAAGGGGCGGGGCTTGCGGGGAGGAATGTCGCACTAATATCGCGACTGAGAATGTGTACTCCTTGATTCAACACCCAAAAGATCGCGGGAGGTTAGATGGAAGCACTGAAGGCACCAATGGGAGGCTGGTAGGGCCTGGTGTTCAGAGGACCCCTCAGCTGTCAGGACGGCCTGTTCAGGGTATACCCCTGCCAGGAATGATGGGAATCAGCCCCTCCTGCTTCTCACACAGACAGTCGCCTGATTACAGCGAGGTTTTCGGCTCATCTGAAGAGATTGGATacagagagcatgagactgaccGGCATTCGGATATTGTCGCTAAAGGCCACACGCCGTCTATAGACAGACAGGAATCAGGAAGACAGGAATCACAGTCAGACAGCCAGAAAAAGGCAGACGGTGTAATAGATCCTCAGCTGCTGGAAACCAGAAAAAGACCCGATCCGCCGCCTCAGAGCACCAAACCAAGCCTTGCAAAGACACGGCAGCGCCATCTGGAGGAGAGTTCTGATAAATCTACTGAAGATTCGGGAGAGCTAAGGGAAAAGGATGAGGAAAAAGAGAACGGAAGATGTGGAGAGGACCTAAAAGACCAAAAACCACAAGGACAGACTCCACTGATCCCTGAAAAGCCATGTTATTATTCACCTCACACGTCTCCCATTGGCTCCTCGCCGCATGACGTGGCCAATGAGCATCAGCCACCAGCTGCTCCGCCCACCTCTGCTAAGCCTGTGTTTCATTCCACTTCAGTAGATTCTGCTTTACTTCAAGGTGATGAAATCAAGAGCAGTCCTGGAGGTCCCATGAAACCACATCGAAACAGGAAAGCGAACTCATGTGACACAGGAATGGAGCAGGACACCCGCTGTGATCTGGAAAGATCCTCAGATCGCAAACCCCCTGTGAAAAAACCTAGACTCCCTCCGAAAATAAATAAGTCATTGGATTTCCCTGGTCATCAGAGTTCAGAGCCGAGCAACTCTGAAGCATCATGACAACCATTTGAGCCAAAGCTCTGTGAAAACATGGGCTCATTGTGATGCCGAGAGGAGAGAgcgagtgagagaaagagaggagggAGAGAGAATTTGCACCTTGATCAATTTCATAGTCATTTTGCACACTCATATTCTTGCATACTCCAGTGAGTTGTTTTGCTTTCCCTCCTGCTTTTGACTTAACATtccttcttaaagggatagttcactcggAAAATTTTTAATTCGGTTCTCATTTacgcacgtcatgattttgccaagtatgatgcgaTTTTGGGTTAACATCCATGTTGATCCTAGAACATAATtctatacctattccctacccctaaacccaaccataactgtaaattattcccagtTGGATAATAATCATGTAGATATGATTATAAtcaagtgcataaacctaaccttaagcctaaacttaacataaatagTGAACATATGCCctaactctgattggctgattggagtGTTGTTCCAGAATCAATGCAGATGTTAccccaggaacatgtcctacttagtGAAATCAAGTTAGTGCTCATTTACGCACCCTTAGTGgttgcaaacctttatgagttcttttttttctgttaaacacaaaagaagatattttgaagattgctGGAAACTGCTAGCCATAAGCTGTATTTCTGTCCAAAGTTacccatttatttttaaaaatattgcaaataaaacacAGTTTCCATTCCATGTGATCAAGACCGTTACAAATTGTAATTTCCagtaaaactaatgaaaaatattcattcattttcttttcggtgtagtccctttattaatcaggggtcaccacagcgaaatgaactgccagcttatccagcacatgttccatgcagcaaatgcccttccagctgcaacccattacttggaaacatccatacacactcattcacacacacacacacaccaaagacaatttagcttacccaattcacctataccacatgtttttggacttgtgggggaaacagaagcacctggaggagacccacgcgaacatggggagaacatgcaaactccacacagaaacgccaactgacccagttagagctcgaaccagcaacctttttgctgtgagacgattgtgctacccactgcgccactgtgctgcccatgaaaaattttaataattaaaaacgaGAGTTTCTGCAAGCAGAGAAACAGCTGTATGTCATTTGTTTGGGAAAATGATTGTGTAAAGCTTTTCTAGGAGGTAACAATACAGAATCATTTTTAGGATGGAAATTCACTGAGTTGTTTTATCATATTGAACCGTTTTCTAATTCAGAGTAGAATAAATATCATAAAGTAATTTGTCAGACAAACAAGAATTTGGttaaatagtaaaacaaaacaatgcaatgaCAAAGGTCAGAAACATCTATTAAGAGCATATTACGATAGTTAAAATGCAGCTGAATGGAAGACAGAACATAAATTCCttagagacagttcacccaaaaataaaaattctgccaCCTTTTACTCatctttgatttattattaatttattaatgatttattaatttattattaaattattattattatttttttaatataggaaactgctaaccactgacttccaaagtTTTCCcaccatggaagtcaatagttaactctttttttcaacattcttcaaagtatctttttaATATGAACATTCAATATAATTGTATGATATTATCTATAAACCCCTAGTAATACTTTCGCTCAGGTATTAGCAGAAGTATCAAATCAACATTTGAGATGGTATGAGATAAGATTGGTTCACTGGTTAGGCTAGTTATCTAATCACatcacttttttaatgcacattaggGGTTTATTATGCGTttcataattaaatgaaatgtaacagaggccagcaaGCGAAGTGGTATGCAGGTAAGCTTCACTCTTCTGGcttcaaaaggtgctctagcgacagacactagaggctatggtctttagcctccttattAGAGCAATCAACTCACATGCAAAAaatcgccagttcgatcccaACGCAGCGCGGGATGGGTGAAGTAGGATtggtgggttacacatgggggttcgcccgggatgggagtgaggtttaggtggagtgagtgtaacggaggccagctagtgaagtgttatgcaggtaaaccttactcctccGCCTTCAAaatgtgctctagcgacagacgctcagggccatggtctttaacctccttgttagagcaatcaACTCCCATGCAAGAAATAACCGGTTCCATCCCAGCTCAGTGCAGGTTGGGTGCAATAGGATTGGTGGATCACACATGGGGGCTCGTCTGCGATGGGAGTAAggttaggggggtgagtgtaacagaggccagctagcgaagtgttatgcaggtaaacctcactcctctggcttcaaaaggtgctctagtgacagacactagaggccatggtctttagcctccttgttagagcaaccgactcccatgcaaagaattgccggttcgatcccagctcagcacgggttgggtgcagtaggaccagtgggttacataTAGTTtagatgcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaagtttatGATTATAAGAGTCAGTGGCTCAAGGTTTCCAGCACTGTTCAAACAGAAGAAGTTCAAAACAAGGATAAAAGTGTGATGAAATGATGATGACAGAGTACTcagttttttgggtgaactaaacctttaaCCTTCTGCACTTAACTACCATTCCTTCATTTAATGTTCTCTCCGTCTCTCTCCCTCCGAGTCTGCCGACAATCTTTGACATAAAGGAACTTTTTTGCTATTTATCTTTAAAACCATAGAATGATATTTTGtaaagtataatatataaacagaACCAATATTTGCACTAATCATGGCTTGAATTCTCTTTCGGTTTGGTGGATGTTCCTCCCCTCATGTCTGTGTGACGTTTTCGTAGTGTGCGACTAACTTATCATTTTCCGTCTACTCGATCAATATCATTAGCAGTATTACTGTTGTCTTAATCAGGCATTGTTTATGCAACTGGATAAATGTTTAAGAGTTTGCCGGCCCTAAATGAGCTTTATTTTCTACTAAatgtgactgaatgaataaaaactaaatatcac
>TCONS_00031364
GTGTCACGTCTCTTTCGCAGGCCTTGTGCTCTAGTGATGACTACTCCAATTCTCTTCTTCATCTGGATCTGAGTAAGAACCCTGGCATTCTGTCTGGAGAAGATGCAACGAATCTGTACCTGTTTCTGGCACAGCCGAACTGCCTGGTGCATTTGGATCTGTCAGGCACTGACTGTACCGTTGACTCTTTATTTGGAGCTCTGCTGCGGGGATGCTGTGCCGATCTCTCCTACTTGAACCTGTCGAAAAACTCCTTCTCTCACAGGAAAGTGAGAGAGACACTTCCTTCCTTCCGTCAGTTCTTCAGTTCAGCGTTCAGCCTCACTCATATCAGCCTGGCCTCTATGAAGATGCCTCCCGACGTGCTGAGGGCTCTGTTCCTCGGGCTTTCATCCAATCCTCACATCACTGACCTGCACCTGGACATCAGCGGCTGTGAGCTCAGGTCTGCTGGAGCAGGGATAATACAGGACCTTTTCCCCAGAGTCTCCTGCATCAGCACACTGGACATCTCAGACAACGGGCTGGATGGGGATCTGCTGTGTGTCATTCCTGCCTTCTCCAGACACCCGTCCCTAAAACACCTGCTCCTGGGCAAGAACTTTAACATCAAGGGCAGGGTTTTAGATGAAGTCCTGCAGAAACTGGTGCATCTTGTCCAGGAGGAAGAGTGTGCCCTGCAGAGTTTGTCTCTGGCCGACTCCAGGCTGCGTTCGAGGGGCACGGTGCTGGTAAACGCTCTAGGCAGCAATGCCTGTCTGAAAAAGGTGGATCTGAGTGGGAACGGACTTGATGACACAGGAGCGAGGATGCTCAGTAAAGCCCTTCAGATCAACACTACTCTCAGaaGTGTGACATGGGATCGAAATAACACAAGTGCTACGGGTTTCCAAGATGTGGCTCGAGCCCTGGAACATAACTTCACCCTGCAGTACATGCCTATCCCGCTCAGTGATGTCACACAGGCGTACCGCAGCTCCCCCGACAGGACAGAACAGGCACTGACCAAGATCCAGCGTGCTCTGTTGAGGAATAACCAGACTCAGCGTTTCTCTCAGAAACAGGCTCTTCGGCTGCATCAGGGCCTGGTAACTAGTACTGCAGAACAGGTGATGGAGCGTCTGTGTGTTCGCGTGcagcagcaggtgtgtgtgttgaGAGGAACGGGTGAAGGTGAAGAGCTCCAGGCTGCCAGACAGGTCCTCAAGGAGGCCAGGAACTCTCGAGCCCTGTACCCCTCGCTGTGTGAACTGGCCCATGTGTTGTCCGTAGACGGGCCGGTGAGACAGAGACTAGACTCTCTGGCAGGAGAACTTGCCAAAGCTGCTGATAAAGAACTACAGGTCATCGTGGACTCCATGGTGTCTCTGTGTCGGGAGCTGTGTCCACTTTCTTGTGCCGCAGCAGAGTGTCTTTCTCCACCACTGTCCTCCATCTCTGAGCGTGTGTCCATCCCTCGTTCATCCATCCGCACCGCTCTGATGGAGAGAGCGGCGCAAGACATCAACAGAGCTCTGGAAGAGGTGAAGCTGTCTGTCGTCTCGTATCTCACCAACTCCATAGTGGACCAGATCCTGCAGGAGCTTTACGCCACACACAAAACCCTG
>TCONS_00031365
aaGTGTGACATGGGATCGAAATAACACAAGTGCTACGGGTTTCCAAGATGTGGCTCGAGCCCTGGAACAgtatgacacacacactcacattcatttcatacacacatacacactcctcATTGCCTCATCCGTATGAGCACTGACTCACTCAACCCTCTGCAAACTTACTAACAGCATGCTGCTACTGGATAAAATAGGATCTTCAGTCCATGCCTACGCGAATCTGTTTTTGATTGCATAGTCTTTCATCACCTCTCCGACCTGCCTGTGATGCTCAATTAAAGTATTGTTCTAGAAACACCTCTTTCTTCCCTGGAGATTTACACCTCTATTATTTAATGTAGAAagtttttattttgcattgaGAGGCCTGTAATGAGTTCTTAGTACAGACTGCTTTGGAAACTGTTGAAAGAAACACAGTgctctcttaaaaaaaaataacgcaaagGCTTCTTTCTTGAGACACAAATAAACTGTTTTCTATTATTCATTGCAATGTTTTGGGAAAACTTTAATGTTTCTTGATTCTCTCCTCAGTAACTTCACCCTGCAGTACATGCCTATCCCGCTCAGTGATGTCACACAGGCGTACCGCAGCTCCCCCGACAGGACAGAACAGGCACTGACCAAGATCCAGCGTGCTCTGTTGAGGAATAACCAGACTCAGCGTTTCTCTCAGAAACAGGCTCTTCGGCTGCATCAGGGCCTGGTAACTAGTACTGC
>TCONS_00031366
AGGGAAAAGGATGAGGAAAAAGAGAACGGAAGATGTGGAGAGGACCTAAAAGACCAAAAACCACAAGGACAGACTCCACTGATCCCTGAAAAGCCATGTTATTATTCACCTCACACGTCTCCCATTGGCTCCTCGCCGCATGACGTGGCCAATGAGCATCAGCCACCAGCTGCTCCGCCCACCTCTGCTAAGCCTGTGTTTCATTCCACTTCAGTAGATTCTGCTTTACTTCAAGGTGATGAAATCAAGAGCAGTCCTGGAGGTCCCATGAAACCACATCGAAACAGGAAAGCGAACTCATGTGACACAGGAATGGAGCAGGACACCCGCTGTGATCTGGAAAGATCCTCAGATCGCAAACCCCCTGTGAAAAAACCTAGACTCCCTCCGAAAATAAATAAGTCATTGGATTTCCCTGGTCATCAGAGTTCAGAGCCGAGCAACTCTGAAGCATCATGACAACCATTTGAGCCAAAGCTCTGTGAAAACATGGGCTCATTGTGATGCCGAGAGGAGAGAgcgagtgagagaaagagaggagggAGAGAGAATTTGCACCTTGATCAATTTCATAGTCATTTTGCACACTCATATTCTTGCATACTCCAGTGAGTTGTTTTGCTTTCCCTCCTGCTTTTGACTTAACATtccttcttaaagggatagttcactcggAAAATTTTTAATTCGGTTCTCATTTacgcacgtcatgattttgccaagtatgatgcgaTTTTGGGTTAACATCCATGTTGATCCTAGAACATAATtctatacctattccct

Function

symbol description
carmil3 Predicted to be located in cytoplasm and plasma membrane. Is expressed in brain; eye; gut; heart; and spinal cord. Orthologous to human CARMIL3 (capping protein regulator and myosin 1 linker 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-183 Predicted to be located in cytoplasm and plasma membrane. Is expressed in brain; eye; gut; heart; and spinal cord. Orthologous to human CARMIL3 (capping protein regulator and myosin 1 linker 3).

Ensembl:

ensembl_id ENSDARG00000086990

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031363 False 7450 mRNA 0.46 40 38742338 38890677
TCONS_00031364 False 1607 mRNA 0.54 16 38804223 38862711
TCONS_00031365 False 726 lncRNA 0.43 2 38846743 38852656
TCONS_00031366 True 786 mRNA 0.45 5 38881165 38887809

Neighbor

gene id symbol gene type direction distance location
XLOC_015757 FQ377660.1 coding upstream 570 38731696 ~ 38741768 (+)
XLOC_015756 cdh24b coding upstream 33255 38554260 ~ 38709083 (+)
XLOC_015755 NA coding upstream 320105 38416017 ~ 38422233 (+)
XLOC_015754 psmb5 coding upstream 349763 38373272 ~ 38392575 (+)
XLOC_015753 NA coding upstream 370394 38370535 ~ 38371944 (+)
XLOC_015759 si:ch211-119o8.4 coding downstream 1954 38892631 ~ 38909401 (+)
XLOC_015760 rem2 coding downstream 34298 38924975 ~ 38977298 (+)
XLOC_015761 rbp1.2 coding downstream 130605 39021282 ~ 39028052 (+)
XLOC_015762 AL953896.1 coding downstream 145505 39036182 ~ 39046184 (+)
XLOC_015763 NA coding downstream 161210 39051887 ~ 39052229 (+)
XLOC_015751 NA non-coding upstream 459242 38280982 ~ 38283096 (+)
XLOC_015741 NA non-coding upstream 742144 37999779 ~ 38000194 (+)
XLOC_015740 NA non-coding upstream 751833 37974996 ~ 37990505 (+)
XLOC_015764 CU179756.1 non-coding downstream 168958 39059635 ~ 39070308 (+)
XLOC_015767 NA non-coding downstream 895070 39785747 ~ 39792446 (+)
XLOC_015768 CU929371.1 non-coding downstream 1166222 40056899 ~ 40057016 (+)

Expression


Co-expression Network