XLOC_015759 (si:ch211-119o8.4)


Basic Information

Item Value
gene id XLOC_015759
gene name si:ch211-119o8.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38892631 ~ 38909401 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031367
GGAGGGCAGTAGAGGCCCAAAGCCAAAGTAAACATCATCTTTCTGTTATGGAAGAGCGATTTTCAAACAGAGATTAGGAAATTTATTGCCTGTGAAGCTTAAACGGTCTCTGAGGACAATGGGCTATTTATTCCATTGTTGCCTCATGAGACTTTTTATTTCACCAAATTACCTGTTTGGAGAGACTGACtgaatttttttgtaattcatcATGCCTGCGATTGTGAATCTGCTCTTCAACACAGTCTCCACCAACACCACCATCTCCTTCTCTCTGGTGCTGCCTCTGGTCAGCATCCTCTCTCTGCTGGTGGGAGTCGGAGGTCACCTACTCATGTGGTTGGTTTTGATGCGTAACCCTCGGCGTCGTTCAAAGCCCAGCTCGGTCCTCCTGTTAAACCTGAGTTTTGCTGATCTGTGCGCTCTGCTCACCTTGCCCTGTGTGCTGCTGAGCGCCAGCTCTCAGAACTGGCAGCTGGGAGGAGGCGTTTGTGTGTTGTTGAGCTTCATGACCTCCCTGACCGCTGGAGTGGACATCTTCAGCCTGGCTGCGCTCTCTGTGCTGCGTTATCGAATAGTGGCTCCCTCGACACGGCCTCCAGCCACCCCTGCGCAGGTAGCTGGCACGGTTGCTGTTATCTGGCTGGTTTCCATCGCCATGGCCCTGCCTAAAGTCACATACATCCAGTTTGATGGTGGCTGCACGTGGTCAGTAGGTCGCGGCCACTGGTTAGGCTTCCTTGTTCCTGCATTTCTAGTGTATTACGTGGCTCCTCTCCTCTGCATTGCCCTGCACTGCGGGCTCATCATCACACACCTCTACCGTTGCCGGGGCACTCTAGCCGCAGACCATCGCAACAAAAAAGCCACCGCCCTCCTTATCGGCTCCACACTGGTGTTTGCCATCAGCTGGCTGCCTTACTACGTGCTGGAGTTCGTCAATGTTTTATCGCCCTCCCTCAATTCTGCAAGCCCCGGCCCCGATCCCACCGCCCCATCATCAGCGTCAAGCACGGAGGTGTCTCTGCTGTGGGAGGTGACCTCGCTGTCTGCCATTCTCCTGATTTGTCTGGCACCTTGCTGGAATCCACCACTCTACTTCCTGCTATCTAAACCGGCCCTGAGGCAGCTGAGAGGGCTGCTCATGCACCAGCACTGGAGAGCTGCTACCCTCCTGCAGCACATAGTGCCAAAACACGCTCCCACACAACCCCACTCACAGCCTGGGTCTTAACACCTTCCTCAGCACATACTACCAGCAACACACTCACAATGAGAACATCCCTTACAAAaatttaccatgtttttttttttttttttgtgagagtaAAATTGTAGCAACCATG

Function

symbol description
si:ch211-119o8.4 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-15 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000075562

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031367 True 1346 mRNA 0.52 3 38892631 38909401

Neighbor

gene id symbol gene type direction distance location
XLOC_015758 carmil3 coding upstream 1954 38742338 ~ 38890677 (+)
XLOC_015757 FQ377660.1 coding upstream 150863 38731696 ~ 38741768 (+)
XLOC_015756 cdh24b coding upstream 183548 38554260 ~ 38709083 (+)
XLOC_015755 NA coding upstream 470398 38416017 ~ 38422233 (+)
XLOC_015754 psmb5 coding upstream 500056 38373272 ~ 38392575 (+)
XLOC_015760 rem2 coding downstream 15574 38924975 ~ 38977298 (+)
XLOC_015761 rbp1.2 coding downstream 111881 39021282 ~ 39028052 (+)
XLOC_015762 AL953896.1 coding downstream 126781 39036182 ~ 39046184 (+)
XLOC_015763 NA coding downstream 142486 39051887 ~ 39052229 (+)
XLOC_015764 CU179756.1 coding downstream 150234 39059635 ~ 39070308 (+)
XLOC_015753 NA non-coding upstream 520687 38370535 ~ 38371944 (+)
XLOC_015751 NA non-coding upstream 609535 38280982 ~ 38283096 (+)
XLOC_015741 NA non-coding upstream 892437 37999779 ~ 38000194 (+)
XLOC_015740 NA non-coding upstream 902126 37974996 ~ 37990505 (+)
XLOC_015767 NA non-coding downstream 876346 39785747 ~ 39792446 (+)
XLOC_015768 CU929371.1 non-coding downstream 1147498 40056899 ~ 40057016 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_16567132_16570668 NA coding CI01000004 null 16567132 ~ 16571368 (+)