XLOC_015761 (rbp1.2)


Basic Information

Item Value
gene id XLOC_015761
gene name rbp1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 39021282 ~ 39028052 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031369
CGCAGAGGACACGCGTAAGAAAGCAGCCAAAATGTCTCCTGTGGACATGAATGGATATTGGAAAATGACAAGCAATGAAAACTTTGATGAATACATGGAGGCTCTAGATGTGAATGTTGTCATCAGAAAAATTGCCAGCTACCTCATCCTAGATAAGGAGATTGTTCAGAACGGTGATCATTTGTACATCAAGACTCTAACCACATTTAGGAACTACGACATGGAGTTTGATGTTGGAAAGGAGTTTGAGGAGGATTTGGTTGGTGTAGATGACAGGAAATGCATGACAACTGTGAACTGGGAAGAGGATAAGTTGGTGTGTGTGCAGAAAGGAGAGAAGGAGGGAAGAGGATGGACGCAGTGGGTTAAAGGGGACGAGTTACATGTGgaAATGAGAGTCTGTGGAGTGGTGTGTAAACAAGTTTTTAAGAGACAAGTGTTTGACTGA

Function

symbol description
rbp1.2 Predicted to enable lipid binding activity. Predicted to act upstream of or within retinoic acid biosynthetic process and vitamin A metabolic process. Predicted to be located in cytosol. Orthologous to human RBP1 (retinol binding protein 1).

GO:

id name namespace
GO:0002138 retinoic acid biosynthetic process biological_process
GO:0006776 vitamin A metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-18 Predicted to enable lipid binding activity. Predicted to act upstream of or within retinoic acid biosynthetic process and vitamin A metabolic process. Predicted to be located in cytosol. Orthologous to human RBP1 (retinol binding protein 1).

Ensembl:

ensembl_id ENSDARG00000038742

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031369 True 448 mRNA 0.43 4 39021282 39028052

Neighbor

gene id symbol gene type direction distance location
XLOC_015760 rem2 coding upstream 43984 38924975 ~ 38977298 (+)
XLOC_015759 si:ch211-119o8.4 coding upstream 111881 38892631 ~ 38909401 (+)
XLOC_015758 carmil3 coding upstream 130605 38742338 ~ 38890677 (+)
XLOC_015757 FQ377660.1 coding upstream 279514 38731696 ~ 38741768 (+)
XLOC_015756 cdh24b coding upstream 312199 38554260 ~ 38709083 (+)
XLOC_015762 AL953896.1 coding downstream 8130 39036182 ~ 39046184 (+)
XLOC_015763 NA coding downstream 23835 39051887 ~ 39052229 (+)
XLOC_015764 CU179756.1 coding downstream 31583 39059635 ~ 39070308 (+)
XLOC_015765 clstn2 coding downstream 80287 39108339 ~ 39555667 (+)
XLOC_015766 zgc:136870 coding downstream 590899 39618951 ~ 39621103 (+)
XLOC_015755 NA non-coding upstream 599049 38416017 ~ 38422233 (+)
XLOC_015753 NA non-coding upstream 649338 38370535 ~ 38371944 (+)
XLOC_015751 NA non-coding upstream 738186 38280982 ~ 38283096 (+)
XLOC_015741 NA non-coding upstream 1021088 37999779 ~ 38000194 (+)
XLOC_015740 NA non-coding upstream 1030777 37974996 ~ 37990505 (+)
XLOC_015767 NA non-coding downstream 757695 39785747 ~ 39792446 (+)
XLOC_015768 CU929371.1 non-coding downstream 1028847 40056899 ~ 40057016 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_16649360_16654303 NA coding CI01000004 null 16649171 ~ 16654353 (+)