XLOC_015762 (AL953896.1)


Basic Information

Item Value
gene id XLOC_015762
gene name AL953896.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 39036182 ~ 39046184 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031370
aaagagcttgattagctggttcaggtgtgtttaattgtgaTTGTAACgaaaatttgcaggacactggcgtccaggaccgagtttggacatccctgaatTAACTCAAAGTTATCCAACAGACTTGTCGACATCTGAACAAATTTTAGGCTTCTCAAGTTAACAAATACCAGATATTTTCTCCCTATATTTCAGTAGCATAAAAAAGCGTTTAATAAAGTGTGGATCCAAACAAATCAAAggctaatcataataataaaaacttaccAAGAGCTTTGAGATACTCAAAGTTGTTGTTGGAGATCATTTTCCAGTAACCAGTGTAATCAGGCATTTTGAACTACAGGCAACGCGATTGTTGTcctaaaaatgtgtttataatgcAGACCTGATGCCTGGTCGTTCAGCTCCTGTCGTGCAGCACTCTGGCACTTATCAGCACTGCATTTTATTTACTACCATATTAAGCGGATCAGCTTCATTACTGCGACGCATGCGGGGGTGGAAACACTCCCACTACGTGCTCGACCACGGTCATTACACTCAAGACTCAAAAGTACAACATCGGAACATATGGATTAATGAGGCATGATGGGAAGGAAAGCAAAACACTGCCATGTTCAGAACCCAAGAGACCGACAGACTCTTCAATCAGAGCGACAGCATCCGGGCGGCACTCAGACTCCCTCACATCATTTTTCCTTCTGCAAATCCTCTCTGGAGTCTAATTACTTTTATGTACACGGAAGCTCCCAAATCTGAAGACTCTTTTGTTGAGTCCGAGAGCATATCCCGACGCACCTGTTGTTTGATGGTTTTCTCGCAGAGCTGCTTATCCCGGTGTTCTCGATACCACTAATGTAAATGACAAGCGGCGACACCTCCCAGGGAAAGTCGCTGGAGATTTTCCACCGCGAGGATCAGAACAAACAAGCACTTATAGACTGTGACAGACTATCACAGATGGTGTTTGTCTGGATTTCACAATAGCAGAGATGAAGGCGCACGCAGACAGACAAGAGAGATGCTGCTGGAAGAGTGGCATGAGTTTATATACTTTAAAGTGTTGGATTTTGATGGATCTCTCTTAGAGTCTCCAGTAGGGGGTGTTAACTTTACAATGGCCATTGACAACTCTTGTGGCACTCTAAGCAAAGAAGAATCATAACCGACTGATCTTGGTTATGatgaaacataactattttactattaaatgagatcatacaaatttttTATACTGAgtttaagggtgttttcacacctgccttatttagttcggttgaatcacACTACAGTTCATTTTCCATCTTTGTGCGgatcgtttgggcaggtgtgaatgtaacaATCGCACTCAAGTGTGCATCAAAAGCGAACCAAAAACAGACCAAAAAAGCATACTGAGACCTCCTTGAAGTggtggtcttggtacgctttcaaGCAAACACTGGAatggttcgtttgtggtgagaacatgatccaaACTAGAACAGACCTGGCCGCAAAAAGTACAgtgcctttttggactaatccagctgccatagTCCAATGCGCTGTGCCTCACTTTTGCtaactatttttaatgaaaaggCGTTAAGCTCTGCCCGAAAAGTCGCTAGATTACATCACGTGTCAacttgcatattactgac

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0016579 protein deubiquitination biological_process
GO:0070646 protein modification by small protein removal biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0019783 ubiquitin-like protein-specific protease activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0101005 ubiquitinyl hydrolase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092472

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031370 True 1646 lncRNA 0.42 2 39036182 39046184

Neighbor

gene id symbol gene type direction distance location
XLOC_015761 rbp1.2 coding upstream 8130 39021282 ~ 39028052 (+)
XLOC_015760 rem2 coding upstream 58884 38924975 ~ 38977298 (+)
XLOC_015759 si:ch211-119o8.4 coding upstream 126781 38892631 ~ 38909401 (+)
XLOC_015758 carmil3 coding upstream 145505 38742338 ~ 38890677 (+)
XLOC_015757 FQ377660.1 coding upstream 294414 38731696 ~ 38741768 (+)
XLOC_015763 NA coding downstream 5703 39051887 ~ 39052229 (+)
XLOC_015764 CU179756.1 coding downstream 13451 39059635 ~ 39070308 (+)
XLOC_015765 clstn2 coding downstream 62155 39108339 ~ 39555667 (+)
XLOC_015766 zgc:136870 coding downstream 572767 39618951 ~ 39621103 (+)
XLOC_015767 NA coding downstream 739563 39785747 ~ 39792446 (+)
XLOC_015755 NA non-coding upstream 613949 38416017 ~ 38422233 (+)
XLOC_015753 NA non-coding upstream 664238 38370535 ~ 38371944 (+)
XLOC_015751 NA non-coding upstream 753086 38280982 ~ 38283096 (+)
XLOC_015741 NA non-coding upstream 1035988 37999779 ~ 38000194 (+)
XLOC_015740 NA non-coding upstream 1045677 37974996 ~ 37990505 (+)
XLOC_015768 CU929371.1 non-coding downstream 1010715 40056899 ~ 40057016 (+)
XLOC_015770 NA non-coding downstream 1172380 40218564 ~ 40222006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G34409 NA non-coding NC_048565.1 CM023219.2 32763255 ~ 32765669 (-)