XLOC_015779


Basic Information

Item Value
gene id XLOC_015779
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41771111 ~ 41795569 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033294
TAATACACACATTCCCAGAGACTtgtcattatattataataaacttCTTCTGTCCTCTACCCACCTGTTCCACTGTGCGAGTTCCCGaggcgtgtgtgtgcgtgtgtgtgtctcatgtttttgtttttttctgtcgcCCTCGACGCGTGCACGGCGCGCGCTCTCCTCTCTGTTCTCATCACCGACTATCACTTCCGTGTTGGCGTGTCTCGACGTCACGCGGAATGTGAAGCAGGAAACACGGATGTGTTGCGCTTAATCTGCATCTACAGCCGTGTTCCGATCCATATGTTGAAGCCAAACCCCCTTCCGAGCTGATCTGATCCAGACGCGGAGCATCGGTTGAACGGTACCGAGTGGAGGAATGCCTGCCGGTAAGATGCCGAACCCGAGCCGGTCATAACCTCAACCTTCTGTCATTAACTTAAGACGGTTTATGCTGCAAACATTGTGCTGCAGTGTGTATGTGAGAATGAGTCAGTGTCTTTACTAAAGTCCTGCTGATCTCAGCTCTTCCCTGCTGCTTCAGCAATAACAGAAAAGCACAGCGAGTACCATGGTATTTCCTTTGGCTTCAGTATAATAGAGAACTTTATCTTAATAAATGTGCTTCTAATCACTAAATGCATTCCATGAGTGTATTACATTTTCTTGCGACGATTAATAGCGTAAGCTTTtatcgcggtatacggtattacgTTTACCTAAGTTTCAAAAAGGTTACTCGAACAGGTATAATAACAATACTATGGTAAAT
>TCONS_00033637
GAAACACGGATGTGTTGCGCTTAATCTGCATCTACAGCCGTGTTCCGATCCATATGTTGAAGCCAAACCCCCTTCCGAGCTGATCTGATCCAGACGCGGAGCATCGGTTGAACGGTACCGAGTGGAGGAATGCCTGCCGATGCTCTCGTGTTGGCAGTAATGGGGATTCAACAGGCACCAGTGGGAAGCGGGATTTGCACCTTGCTCTGGGTGGGCCGCTCTGggtgagcgccccctgctggaagTGGCTGTGTCATCTAGCTCAAAATAGAGCTTTCTTTGTGCAAATTGAGAGAGAGGGAAGATTTGTTATTTCACATTTAGTTTGATATTGGTATTATTGATAGTCTTTCCTGTTGCTTTGATTGATTTAGCCAAGGCTTGTtcacttgttttgtgtttttgaaaactttaaaatgtgacatttttatttgGCTGGAAATCAGAGGATGGCTCTTCCTTTTTGCAGTGGACACTAGAATTAGGCAAAATCActacttttgaaaaaaatgtcatgTAAGCAGATGGACAaagtacagttgaaaccagaagtttacatacactctaaaaaaaaaaggaacataatcttttatttttttaatgt

Function

GO:

id name namespace
GO:0016441 posttranscriptional gene silencing biological_process
GO:0016458 gene silencing biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0034248 regulation of cellular amide metabolic process biological_process
GO:0034249 negative regulation of cellular amide metabolic process biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0017148 negative regulation of translation biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0040029 regulation of gene expression, epigenetic biological_process
GO:0040033 negative regulation of translation, ncRNA-mediated biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0035194 post-transcriptional gene silencing by RNA biological_process
GO:0035195 gene silencing by miRNA biological_process
GO:0045974 regulation of translation, ncRNA-mediated biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0016442 RISC complex cellular_component
GO:0000932 P-body cellular_component
GO:0031332 RNAi effector complex cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0061980 regulatory RNA binding molecular_function
GO:0004518 nuclease activity molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033294 False 757 lncRNA 0.45 2 41771111 41772041
TCONS_00033637 True 604 lncRNA 0.42 3 41771346 41795569

Neighbor

gene id symbol gene type direction distance location
XLOC_015778 NA coding upstream 188082 41578068 ~ 41583029 (+)
XLOC_015777 acvr1l coding upstream 227349 41524238 ~ 41543762 (+)
XLOC_015776 NA coding upstream 522110 41230916 ~ 41249001 (+)
XLOC_015775 BX510333.1 coding upstream 734920 41036076 ~ 41036191 (+)
XLOC_015774 NA coding upstream 785806 40983293 ~ 40985305 (+)
XLOC_015780 crlf1a coding downstream 81026 41876595 ~ 41920632 (+)
XLOC_015781 odf3l2a coding downstream 131138 41926707 ~ 41934019 (+)
XLOC_015782 gbp2 coding downstream 209648 42005217 ~ 42017282 (+)
XLOC_015783 NA coding downstream 217507 42013076 ~ 42013350 (+)
XLOC_015784 vcpip1 coding downstream 276662 42072231 ~ 42083513 (+)
XLOC_015773 NA non-coding upstream 999060 40770072 ~ 40772051 (+)
XLOC_015798 NA non-coding downstream 615319 42410888 ~ 42422644 (+)
XLOC_015799 BX005044.1 non-coding downstream 628115 42423684 ~ 42423799 (+)
XLOC_015800 BX294109.1 non-coding downstream 791169 42586738 ~ 42587035 (+)
XLOC_015802 NA non-coding downstream 821292 42616861 ~ 42624890 (+)

Expression


Co-expression Network