XLOC_015780 (crlf1a)


Basic Information

Item Value
gene id XLOC_015780
gene name crlf1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41876595 ~ 41920632 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031383
CTAGCAGTGGAGAGCCTCGGCACGGTAAACGATGCCAAAAGTAAATGAAGAGGACGAATGCACCGTCGCGTTAACAGAACATTTGGCGGCTCTTATGTAAAGTTCAGTGTTGTGGAAGATCCGCGGGACGTGAGCAGCTCAGGAACCGACGCTGGGATCAACTGTTCGGGTGcactggagctggactcggtgtGGCATGCGTGGATCTTCAGACACTCCTGCATACGCCAATAACACGCTGTCGTGCTAATAGAAAGAAAGCGAACATTCCTCGTAAGATGATCTGCTTATTGTTTTTGCACCTCTGTGCTGCCGGCGTGTTGTCGTCTTCCACCCAGGTGGCTACAATCTACCCTCAAGACCCCGCCCTGCTCATCGGCTCCAGCCTGACAGCAACGTGTTCGGTCAATCCAGACCACGGCATCCATGCAGGCTCGCTCTACTGGACGCTGAACGGCAAGCGTCTTCCCAGCAGCACCTACAGCATCTTAAGCCCCACTGTGATCAGTGTCACCCTGCCCAGGCTCTCAGGGTCCCGTCAGCGCTCTGGAGACAACCTTGTATGCCATAACGGTGGAGGTCATGTGCTGGCCGGCTCCTGCATCTACGTTGGCATGCCTCCTGAGAAGCCTGTGAATCTTACCTGCTGGTCCAGGAACACTAAAGACCTCACCTGTAGATGGGCCCCTGGGGGCCAGGGGGAAACCTTCATCAAGACAAAATACACACTCAAATATAAGCTCAGGTGGTACGGACGGGAGAAGGAGTGTGAGGACTACAGCACGGGAGAACCATACACGTGCTACATCCCCCGCGACCTCGCCCTCTTCACGCCCTATGAGATATGGGTGGAGGCGTCCAACCAACTCGGAACCGCAACGTCTGACGTCATCTACCTGGATATCTTAGACGTGGTGACGACAGATCCACCGACTGATGTGACGGTGAGCCGAGTTGGAGATCTGGAGGACCAGCTGACCGTGCGCTGGGGGACACCGCCGGCACTCAAAGACTTCCTATTTCAGGCCAAATACCAAATCCGATACAGACTGGAGGAAAGCAGCGACTGGAAGGTGGTGGATGATGTTGGAAACCAGACTTCCTGCAGGCTGGCAGGGTTGCGGCCGGGCACAGTGTATTTTGTGCAGGTGCGCTGTAATCCGGTGGGGATTCTGGGATCTAGGAAAGCAGGCATTTGGAGCGACTGGAGTCACCCAACTGCAGCCTCAACACCACACAGTGAGCGGTTGTTGACAGGGTCATGCGACTCGAAGGCCGGACAGCAGAACTCAACGCTACGGCGGGATTTAAAGCAGTTTTTCGGCTGGGTGCGCAAACATGCTTACGGTTGTAGCGGGATGAGCATCAAACTTTATGATCAGTGGAGGGTCTGGCTGCAGAAATCTCACAAAACTCGCAACCAGGTTCTTCAAGGAGATAAATCATAGCACGTCGCTGCTGGCAGGCAGAAAGAACACTTAACAACAACAGCACACTGTGGAAAAAACTCACATTTTCCAGACCGCTGCTTGACTCAGTGCAGGAAAGTTAAAGTACAGCTGGACTCACAAACGGGATGTTCAAACAACAAAAGGTGACGGGCATTTGGGGCTCTTGGACACAGATTTCATTGTGCGGTTCGCTAAAATGccttataataacaaaaacaaacggttaaatgtttttctttgacATTAGCCATGAAGATCTGGTGGACTATATCCTCGCAACTCGCAATCCGTGAAGATTTTTTGACCATGTCGAGGAAGCAATTAATTAAAGGTCATAATTTGCACATGTTTAATAAGGATGACTTCGATGTGACACATGGTCTGAACGCGGACACGTGGCGTTTTCTGATCTGTGTGCTATAAGCGATTCATCCTCATGGACAAACGGGAAACTTATGAACGTTTTTCAGTGTAACTTTAAGACAACTGGACGAATAATAAGGCCATCCAGTTTTACCAAAGGTATCATTTATGAATGTTTGAGTGTGACAGACTTTATATTCCAGCAgaaaatgttgacaggtataccTCACAAAACACTTTGTAGTCTGCTATTTCGTTAACTGGTACGTGCCATATCAAAAGTTGATCCCATGCAATGCTGAAAATATCATAAAACTAAGTCTCGCTGCATTTGAAACTCAACCACAAACATTGGAGGATTTCAAATTTGACATGTTGGATCCCCAAAGTGGACTCAAAAGTGGCCACGAGGAAGATTTTGGCCAGCCAATGTTCTCTTTTGTTTATACATGTGTTGCCGTTAGCAAACGTCAAGTGTGTTTGTAGCATTGAActgtttgaaaataattttatgtATTGAGACATTTTActacttttatttttgtactgAATTTGTatccacatatttaaatgtaaagttatGTTTCGATTCTTAAGTTATGTGTAGgtagattatattattattgactgAATTGTTAAGCTCTAATATTGTGCATAAAATCCTTCTTTAAGATCCGACTTA
>TCONS_00031384
AACGATGCCAAAAGTAAATGAAGAGGACGAATGCACCGTCGCGTTAACAGAACATTTGGCGGCTCTTATGTAAAGTTCAGTGTTGTGGAAGATCCGCGGGACGTGAGCAGCTCAGGAACCGACGCTGGGATCAACTGTTCGGGTGcactggagctggactcggtgtGGCATGCGTGGATCTTCAGACACTCCTGCATACGCCAATAACACGCTGTCGTGCTAATAGAAAGAAAGCGAACATTCCTCGTAAGATGATCTGCTTATTGTTTTTGCACCTCTGTGCTGCCGGCGTGTTGTCGTCTTCCACCCAGGTGGCTACAATCTACCCTCAAGACCCCGCCCTGCTCATCGGCTCCAGCCTGACAGCAACGTGTTCGGTCAATCCAGACCACGGCATCCATGCAGGCTCGCTCTACTGGACGCTGAACGGCAAGCGTCTTCCCAGCAGCACCTACAGCATCTTAAGCCCCACTGTGATCAGTGTCACCCTGCCCAGGCTCTCAGGGTCCCGTCAGCGCTCTGGAGACAACCTTGTATGCCATAACGGTGGAGGTCATGTGCTGGCCGGCTCCTGCATCTACGTTGGCAGTGAGTCCTGTCTACCATATTGTTCCTATTTACTACAGAGTGCGCTTAATTGGTGAATGTGCACGCAGTCCAACTTAAATACGATTAAATGGATTCTGTGGGTAAGCCTGGGGCCTTGGGGGAATATGGGTGAGACTAATAGACGGTCTTCATGCATTGACCCCCTGCCACTGAGCTGTAGTTTTTGCAGTGTTTAAAGCTGAC

Function

symbol description
crlf1a Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be part of CRLF-CLCF1 complex and receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in diencephalon; hypothalamus; optic tectum; and telencephalon. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 1. Orthologous to human CRLF1 (cytokine receptor like factor 1).

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein biological_process
GO:0097058 CRLF-CLCF1 complex cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0019955 cytokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-397 Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be part of CRLF-CLCF1 complex and receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in diencephalon; hypothalamus; optic tectum; and telencephalon. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 1. Orthologous to human CRLF1 (cytokine receptor like factor 1).

Ensembl:

ensembl_id ENSDARG00000024365

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031383 False 2496 mRNA 0.48 8 41876595 41920632
TCONS_00031384 True 792 lncRNA 0.53 2 41876622 41882160

Neighbor

gene id symbol gene type direction distance location
XLOC_015779 NA coding upstream 81026 41771111 ~ 41795569 (+)
XLOC_015778 NA coding upstream 293566 41578068 ~ 41583029 (+)
XLOC_015777 acvr1l coding upstream 332833 41524238 ~ 41543762 (+)
XLOC_015776 NA coding upstream 627594 41230916 ~ 41249001 (+)
XLOC_015775 BX510333.1 coding upstream 840404 41036076 ~ 41036191 (+)
XLOC_015781 odf3l2a coding downstream 6075 41926707 ~ 41934019 (+)
XLOC_015782 gbp2 coding downstream 84585 42005217 ~ 42017282 (+)
XLOC_015783 NA coding downstream 92444 42013076 ~ 42013350 (+)
XLOC_015784 vcpip1 coding downstream 151599 42072231 ~ 42083513 (+)
XLOC_015785 crha coding downstream 191871 42112503 ~ 42114036 (+)
XLOC_015774 NA non-coding upstream 891290 40983293 ~ 40985305 (+)
XLOC_015798 NA non-coding downstream 490256 42410888 ~ 42422644 (+)
XLOC_015799 BX005044.1 non-coding downstream 503052 42423684 ~ 42423799 (+)
XLOC_015800 BX294109.1 non-coding downstream 666106 42586738 ~ 42587035 (+)
XLOC_015802 NA non-coding downstream 696229 42616861 ~ 42624890 (+)

Expression


Co-expression Network