XLOC_015792 (ftr06)


Basic Information

Item Value
gene id XLOC_015792
gene name ftr06
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42247560 ~ 42250254 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031399
ATGTCTGACTCGAGTAAAATGGCAGCTGAATCCAGTGTTTCTTTCGCTCAGGATCAGTTCAACTGTTCAATATGTCTGGATCTACTGAAGGATCCAGTGGCCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGACTATTGGGATCAGGATGAGTGGAGAGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGACTGAAGTGGTGGAAAATATCAGGAAGAGAAAACTACAAGCTGGAGATGTGGAGTGTGATGTCTGTATCGGGAAAGCTGTTAAGTCTTGTCTGGTGTGTCTGGAATCTTACTGTCAGACTCACTTTGAACAACACGAGGAATTTCACTCTAGAAAGCGTCACAAAGTGACTGATGCCAATGGACGGCTGCAGGAGATGATCTGCCCTCAACATGACAGACTGCTAGAAATGTACTGCAGAACTGACCAGCGCTGTATTTGCATGCTGTGCTTGATGAATGAACACAAAACCCATGAAACTGTGTTACCAGCTGAAGAGAGAGCAGAGAAACAGAAACATTTTAACGAGAAACTCCAGCAGAGAATACAGGAGAAACAAAAACAATGTGAGGAGCTGAGAGCGGCTGTAGAGTCTCACAAGGTGAGTTTTGAgcagaagatcaactgctggctGCTGGAAGAGCTGCTTCCTCCAGTCAGTCTATGGAGCTTATGACAATAATTTGTATATCTGAAATTAAACcatagatggatgaatagttCCTCCAGTTAAATGAACCTAAACCAGAGCTGATTTTGCTTGGCTCCAATTTGCAGTTTGAAAAATACAGTGTTCTCTTGGGTTGTTaaaggtc
>TCONS_00031400
ATGGCAGCTGAATCCAGTGTTTCTTTCGCTCAGGATCAGTTCAACTGTTCAATATGTCTGGATCTACTGAAGGATCCAGTGGCCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGACTATTGGGATCAGGATGAGTGGAGAGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGACTGAAGTGGTGGAAAATATCAGGAAGAGAAAACTACAAGCTGGAGATGTGGAGTGTGATGTCTGTATCGGGAAAGCTGTTAAGTCTTGTCTGGTGTGTCTGGAATCTTACTGTCAGACTCACTTTGAACAACACGAGGAATTTCACTCTAGAAAGCGTCACAAAGTGACTGATGCCAATGGACGGCTGCAGGAGATGATCTGCCCTCAACATGACAGACTGCTAGAAATGTACTGCAGAACTGACCAGCGCTGTATTTGCATGCTGTGCTTGATGAATGAACACAAAACCCATGAAACTGTGTTACCAGCTGAAGAGAGAGCAGAGAAACAGAAACATTTTAACGAGAAACTCCAGCAGAGAATACAGGAGAAACAAAAACAATGTGAGGAGCTGAGAGCGGCTGTAGAGTCTCACAAGCGCTCTGTACAGGCAGCAGTGGAGGACACTGAGAGGATCTTTACTGAGCACATACGCTCCATCGAGAGAAGCCGCTCTAAGGTGACACAGCTGATCAGAGATCAGGGAAAGGCTTCAGTAAGTGGAGCTGAAGGACGACTGGAGCAACTGGAGCAGGAGATTGATGATCTGAGGAGGAGAAACACTGA

Function

symbol description
ftr06 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-228 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000018506

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031399 False 874 mRNA 0.44 2 42247560 42248687
TCONS_00031400 True 830 mRNA 0.47 3 42247578 42250254

Neighbor

gene id symbol gene type direction distance location
XLOC_015791 ftr02 coding upstream 4826 42236118 ~ 42242734 (+)
XLOC_015790 si:ch211-235o23.1 coding upstream 22857 42212948 ~ 42224703 (+)
XLOC_015789 ift57 coding upstream 37034 42200390 ~ 42210526 (+)
XLOC_015788 cavin4a coding upstream 48960 42191592 ~ 42198600 (+)
XLOC_015787 tmeff1a coding upstream 60442 42176922 ~ 42187118 (+)
XLOC_015793 ftr04 coding downstream 9767 42260021 ~ 42334707 (+)
XLOC_015794 ftr10 coding downstream 21576 42271830 ~ 42273108 (+)
XLOC_015795 ftr06 coding downstream 44690 42294944 ~ 42308424 (+)
XLOC_015796 ftr08 coding downstream 67758 42318012 ~ 42321154 (+)
XLOC_015797 ftr10 coding downstream 94050 42344304 ~ 42345571 (+)
XLOC_015783 NA non-coding upstream 234210 42013076 ~ 42013350 (+)
XLOC_015779 NA non-coding upstream 451991 41771111 ~ 41795569 (+)
XLOC_015778 NA non-coding upstream 664531 41578068 ~ 41583029 (+)
XLOC_015776 NA non-coding upstream 998559 41230916 ~ 41249001 (+)
XLOC_015775 BX510333.1 non-coding upstream 1211369 41036076 ~ 41036191 (+)
XLOC_015798 NA non-coding downstream 160634 42410888 ~ 42422644 (+)
XLOC_015799 BX005044.1 non-coding downstream 173430 42423684 ~ 42423799 (+)
XLOC_015800 BX294109.1 non-coding downstream 336484 42586738 ~ 42587035 (+)
XLOC_015802 NA non-coding downstream 366607 42616861 ~ 42624890 (+)
XLOC_015803 NA non-coding downstream 395134 42645388 ~ 42645994 (+)

Expression


Co-expression Network