XLOC_015795 (ftr06)


Basic Information

Item Value
gene id XLOC_015795
gene name ftr06
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42294944 ~ 42308424 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031407
ATGGCAGAATCCAGTGTTTCTTTGGCTCAGGAGGATCAGTTCAACTGTTTAATCTGTCTGGATCTACTGAAGGATCCAGCGGCCATTCCCTGTGGACACAGTTTCTGTATGAGCTGTATTTCGGGCTATTGGGATCAGGATGAGCAGAAGGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCGGTTTTAGGTAAAAACTTCATACTGACTGAAGTTGTGGAGAATATCAGGAAGACAAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAACCTGTAGATGTGGAGTGTGATGTTTGTACTGGGAGAAAATATAAAGCTGTCAAGTCCTGTCTGGTGTGTCTGGATTCTTACTGTCAGATTCACTTTGATCGTCACGAGGAATTTCACTCTAAAAAGCCACACATAGTGACTGATGCCACTGGACGACTGCAGGAGATGATCTGCCCTCAACATGAGAAACTACTAGAAATGTACTGCAGGACTGACCAGCGCTGTATTTGCATGCTGTGCTTGATGAATGAACACAAGATACATGAAACTGTATTGCCAGCTGAAGAGAGAGCAGAGAAACAGAAACATTTTAAAGAGACACTTAAGCGACGAATGCAAGACGGACAGGAGGAGTGTGAGAAGCTGAGAGGGGTTGTAAAGTCGCACAAGCGCTCTGCACAGGCAGCAGTGGAGGACACTGAGAGAATCTTTACTGAGCTCATACGCTCCAATGAGAGAACCCGCTCTGAGGTGACACAGCTGATCAGAGATCAGGAAAAGGCTTCAGTGAGTGTAGCTGAAGGACGACTGGAGCAACTGGAGCAGGAGATGAATGATCTGAATAGGAAAAATACTG
>TCONS_00031408
ATGGCAGAATCCAGTGTTTCTTTGGCTCAGGAGGATCAGTTCAACTGTTTAATCTGTCTGGATCTACTGAAGGATCCAGCGGCCATTCCCTGTGGACACAGTTTCTGTATGAGCTGTATTTCGGGCTATTGGGATCAGGATGAGCAGAAGGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCGGTTTTAGGTAAAAACTTCATACTGACTGAAGTTGTGGAGAATATCAGGAAGACAAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAACCTGTAGATGTGGAGTGTGATGTTTGTACTGGGAGAAAATATAAAGCTGTCAAGTCCTGTCTGGTGTGTCTGGATTCTTACTGTCAGATTCACTTTGATCGTCACGAGGAATTTCACTCTAAAAAGCCACACATAGTGACTGATGCCACTGGACGACTGCAGGAGATGATCTGCCCTCAACATGAGAAACTACTAGAAATGTACTGCAGGACTGACCAGCGCTGTATTTGCATGCTGTGCTTGATGAATGAACACAAGATACATGAAACTGTATTGCCAGCTGAAGAGAGAGCAGAGAAACAGAAACATTTTAAAGAGACACTTAAGCGACGAATGCAAGACGGACAGGAGGAGTGTGAGAAGCTGAGAGGGGTTGTAAAGTCGCACAAGCGCTCTGCACAGGCAGCAGTGGAGGACACTGAGAGAATCTTTACTGAGCTCATACGCTCCAATGAGAGAACCCGCTCTGAGGTGACACAGCTGATCAGAGATCAGGAAAAGGCTTCAGTGAGTGTAGCTGAAGGACGACTGGAGCAACTGGAGCAGGAGATGAATGATCTGAATAGGAAAAATACTGAGCTGGTGCAGCTTTCATGCACTGACAATCACATCCATTTCCTCCAGAGTTTCCAGTCTCTCTCTGTTCCTCCTGGATCTACAGACCCATCCAGCATCAGTACTCATCCCTCTTTTGATGATTTGGTTACAGTTGTCTCCGAGTTGAAAGAGAAACTGCAGCAGAccgtaaaagaaaagaaaaaaatcatgcatCGAAAAGTGAGATACATCAATGGGATTCCCACTCCAGAACATGAGAGCAGGAATGAGTTCCTACaatATTACCAGCAGTTGACACTGGACTCAGACACAGCTTATGAATGTCTGCGGCTGTCTGATGGGAACAAAGTGGTGACTAGGATGAAGAAACTACTGCactatcctgatcatccagacagatttgatagTTTTGCTCAGGTGTTGTGTAAAGAGAGTGTGCATGGGCGCTGTTATTGGGAGTTTGAGAGGAGTGGCAGAGGAATGTGTGCATCAGTGTCATACCAGAGCATCAGCAGGAAGGGAAAGGAAAGTGAGTGTAAATTTGGATATAATGATCAGTCATGGTCTTTGTACTGCTCTGACACCAGATGTTCATTCAGGTACAATAATGAAGAGTCTAAACTCAGAGTAGAGTCCAGCTTGTCTAGAATAGGAGTGTATGTGGATCACAGTGCGGGAACTCTGTCCTTCTACAGCGTCTctgacacaatgagcctcattcACAGTGTCCACACCACATTCACTCAGCCGCTCTATCCTGGGTTTGAGGTTTGCAATTATTCAGTTGTAAAACTGTGTGATTAAGCATAACAGACAAGCGAATTCCactagagctgcatgattaattGTTCCAATATGAATAATATCTCAAATATGCATGTGGTCTTGTCTCCAAAAGACAAGCTTGATCTCAATGTACATTTAGACTTTTCACTTTTTAACACTTATGTTAGTTTTAGTCTGCAACTGTTAAGTTTAGTCATTAGTCctagttttaatttcatttacaaatattaaaatgatcataGAAATACTGGAATAatggtttacattttaaatataaatattgatcTTTACCCTAGCATTTAAAATAGAAGttgacactttaaaaaaaaatcatctgttgaaccaACACAGTTCTTCAATGTTTTCCCAAAACAATCTTTATGAATGTGTCATAGAATCATTTATTCAAACtaagctttaaataaataaataaatatatatattcataatatatatattcataatatatatattcataatatagatttttaaaggtgccatataataaaaatctggatatacctagGCATAGATGAATAATAAGTGTTCAGTATGGAGATGGccatactgtgagcctcaaaccccattgtttcctcattcttATTAATTAGCACTGGCTCCAGCTCAATTCCTGTTGAACTCCAGTAAGTAGGGTATTTTATTCACTTGAAATAAAGTGATTCTCTTTAATGTAGTTGATGCAGACTCATTCATAAATTAGTTGCAGCAAAAATGCTGAATACCATTGTGATTTTCTATGAAACTGCTATATTAGCTATTAAATTTTACTTATCTAGCTCATGTTAGCTTGTTTACAATAGCTTGTTAAAGCCATTTcccatgcattgttttatttgtgacAACTTGGCATAACTCAACATTAAAGGTCACAGCATCGATCTtgaaatgtaattacaatacatccAGTTAATTAGTCTTAAGAATTAATTtcgttgttcaagcataaaatgagGTGAAAGAATGTGTATCCGCTAGCACCGTCAGGATCAGCAAGCGAGcgcagaaactctattgaaaatactgttgtaaaataaactgtcatattttaaagacacggcgggggaaatggaatttaatgcagtgctttatGTCCAGTCTGACACCCactttacattatatgtctatcaGGCAGTGCAGATcactgattttaaaagaaatcagacCCTAAATGTGGTAATTTTATAATGGATAGACAGTTCATTGGAAGCACTAAGGCTGGCTGCATGATATTAAAAGTCAGTGTGCATATAGCCTATTACCATAttgtttagctgtgcatttactaAATGAGCATTGCGCAATAGGACCGAAATGACCCCtctgtattttttgtataatcaatttCTATTCTGTTCAAGTgtcttaattaattttaaataaaaatttaaacccTTTTTAATTCCTTGTTTTAATTGTATATGAGAAGCATGACAAATCAGAAATATCAATGAGTGAAAAAACAGATCCATCTCTCACCAGCTCTCCTTAGCTGTCTCTGACTGACCAGCTGACCCACCCACACCCTTCCCCAAACATTATTAATGATAGAAGCAGTGTTTTTCACTGTGAGGACATATCTTAATTTGACTCACTTATTTGTAACATTTACATTAGATGGATGGAATTTGGCCGAGAAGTGTGattagatttttaatgaccacagagagtcaggaccttagtttaacatctcatctaaaAGACGGTGCACACTGACactatagagtccccttcactataatgGTTTAAAAAAGCAAACAGTGTGACTGAGGTTACACAAATCAGCAAGTCAGTAAATCAATAAGTATCTTTATTAACAGTTACAACACAAATAATCTGTGATGTTTCCTTAATGTAAACACATGTatggttttattttgaaaatacatgCACCTCCATAACTTCAGCAACATATTTGATTGTGTCACTGTGTTCCAAATGACTCAAATAATACACAACAATATAATGCAAGCAATATAATGCTTCGTTGTACTGTGAGAGAGTGCTTCTCTTCCGTTTTTTTGTAAACAGTCACATTGATGACAAGTGTACTTAGGCTCAGCCATGGAAAGTACAATGTATTGTAAGTCTACGCCTAAATTCCAAATAAATTTGaagttaaaattttgtttttatttaacagaggaccacaatggaaataagcccagggctttattgtgtttttatcctcgacagttttttttaacaaagtgtatggaatactttttgtacagtttgtctaaaatctgtcaaataaaattcaattcaattcaattcaaaaacGGTCCATGCCCACAATATTGTTTTCAGTTGATTCCGCCATCCCTAAAACGACTGAAATGCTTTCCTTTATTTACTGCGCATGTGCATAGACAAAAGAGGATTTTACATATCCGGCTGCAATTTATTTACTCCCTTTGAAACGTTGTGGCAAAATGAAGAGAAATATGGAGAATGTAAAAACTGACATTcatatacataatatattattatatataattatatatttgtgtgatttattctCAACCTGTTTATTATGAGCTCATTCATTTGTTACATGTAATATCGCAAGTAGAGAaaagaaaaaacttttttgtttcaaatgtaaaaaatgcagacATAGAGCAGTTTCATCTTATGTAGTGTTATTTATCGTGCTGCTACTGCTATTTAAAAGTGCCACTTGGGTTGCCATTTTTCTACATTGAAACTTTTTTGTATTAAGAGATTTAAATTGAGTTTTCAGCCAAATATTGTTAT

Function

symbol description
ftr06 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-228 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000053450

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031407 False 868 mRNA 0.46 3 42294944 42299228
TCONS_00031408 True 4413 mRNA 0.37 6 42294944 42308424

Neighbor

gene id symbol gene type direction distance location
XLOC_015794 ftr10 coding upstream 21836 42271830 ~ 42273108 (+)
XLOC_015792 ftr06 coding upstream 44690 42247560 ~ 42250254 (+)
XLOC_015791 ftr02 coding upstream 52210 42236118 ~ 42242734 (+)
XLOC_015790 si:ch211-235o23.1 coding upstream 70241 42212948 ~ 42224703 (+)
XLOC_015789 ift57 coding upstream 84418 42200390 ~ 42210526 (+)
XLOC_015796 ftr08 coding downstream 9588 42318012 ~ 42321154 (+)
XLOC_015797 ftr10 coding downstream 35880 42344304 ~ 42345571 (+)
XLOC_015798 NA coding downstream 102464 42410888 ~ 42422644 (+)
XLOC_015799 BX005044.1 coding downstream 115260 42423684 ~ 42423799 (+)
XLOC_015800 BX294109.1 coding downstream 278314 42586738 ~ 42587035 (+)
XLOC_015783 NA non-coding upstream 281594 42013076 ~ 42013350 (+)
XLOC_015779 NA non-coding upstream 499375 41771111 ~ 41795569 (+)
XLOC_015778 NA non-coding upstream 711915 41578068 ~ 41583029 (+)
XLOC_015776 NA non-coding upstream 1045943 41230916 ~ 41249001 (+)
XLOC_015775 BX510333.1 non-coding upstream 1258753 41036076 ~ 41036191 (+)
XLOC_015802 NA non-coding downstream 308437 42616861 ~ 42624890 (+)
XLOC_015803 NA non-coding downstream 336964 42645388 ~ 42645994 (+)

Expression


Co-expression Network