XLOC_015804 (ftr11)



Basic Information


Item Value
gene id XLOC_015804
gene name ftr11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42708674 ~ 42713902 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00031417
AGAGTTGAGGATTCCTTTCAGTTTGTGCTGTAAAAAATGGCAGAATCCAGTGTTTGTTTGGCTCAGGAACAGTTCAGCTGTTCAATCTGTCTGGATCTACTGAAGGATTCAGTGGCCATTCCCTGTGGACACAGTTACTGCATGAGCTGTATTTCAGACTGCTGGGATCAGGATGAGCGGAAAGGAGTCTACAGCTGCCCTCAGTGCAGACAGTCCTTCACTCCAAGACCTGCGTTAGGAAAAAACACCATGCTGACTGAAGTGATGGAGAATATCAGGAAGAGAAAATTACAAGCTGGAGATGTGGAGTGTGACGTTTGTACTGGGAGAAAATTTAAAGCTGTCAAGTCTTGTCTGGTGTGTCTGGAATCTTACTGTCAGACTCACTTTCAACGTCATGAAGAATTTCATTCTAGAAAGCGACACAAAGTGACTGATGCCACTGGACGACTGCAGGAGATGATCTGCCCTCTACATGAGAAACTACTGGAGATTTTCTGTCGAACAGATCAGTGCTGTATTTGTTATCTGTGTACAATGGATAAACACAAAAACCACGACACTGTATCAGCTGCAGCAGAGTGGACTGACAAAAAGATTCAACTGGCTGAAATGCAAAAAACAACCCATCAGAGAATGGTGGAGAGACAGAAGGAGCGAGAGGAGCTGAGAGCAGCTGTAGAGTCTCACAAGCGCTCTGCACAGGCAGCAGTGGAGGACACTGAGAGCATCTTTACTGAGCTCATCTTCTCCTTTGAGAGAAGCTGCTCTGAGGTGACACAGCTGATCACAGATCAGCAAAAGGCTGCAGAGGGTCGAGCTGAAGAACGACTGAAGCAACTGGAACAGGAGATTGATGATCTGAGGAGAAGAAACACTGAGCTGGAGCAGCTTTCACACACAGACCATCACATCCATTTTCTCAAGAGTTTCCAGTCTCTCTCTTCTCCTCCTGGATCTACAGACTCATCCAGCATCACTGTCAGCTCTCGTATCTCTTTTGATGATGTTGGTAAATTGTCTCATCTGAGAAAGAAACTGGAGCATTTCTGCAGAGAAGAGATTGAAAAGATATCTAGTAAAGGTAAATTCAACATTTGCAGACATGGAGAAAA
>TCONS_00031418
ATTCCTTTCAGTTTGTGCTGTAAAAAATGGCAGAATCCAGTGTTTGTTTGGCTCAGGAACAGTTCAGCTGTTCAATCTGTCTGGATCTACTGAAGGATTCAGTGGCCATTCCCTGTGGACACAGTTACTGCATGAGCTGTATTTCAGACTGCTGGGATCAGGATGAGCGGAAAGGAGTCTACAGCTGCCCTCAGTGCAGACAGTCCTTCACTCCAAGACCTGCGTTAGGAAAAAACACCATGCTGACTGAAGTGATGGAGAATATCAGGAAGAGAAAATTACAAGCTGGAGATGTGGAGTGTGACGTTTGTACTGGGAGAAAATTTAAAGCTGTCAAGTCTTGTCTGGTGTGTCTGGAATCTTACTGTCAGACTCACTTTCAACGTCATGAAGAATTTCATTCTAGAAAGCGACACAAAGTGACTGATGCCACTGGACGACTGCAGGAGATGATCTGCCCTCTACATGAGAAACTACTGGAGATTTTCTGTCGAACAGATCAGTGCTGTATTTGTTATCTGTGTACAATGGATAAACACAAAAACCACGACACTGTATCAGCTGCAGCAGAGTGGACTGACAAAAAGATTCAACTGGCTGAAATGCAAAAAACAACCCATCAGAGAATGGTGGAGAGACAGAAGGAGCGAGAGGAGCTGAGAGCAGCTGTAGAGTCTCACAAGCGCTCTGCACAGGCAGCAGTGGAGGACACTGAGAGCATCTTTACTGAGCTCATCTTCTCCTTTGAGAGAAGCTGCTCTGAGGTGACACAGCTGATCACAGATCAGCAAAAGGCTGCAGAGGGTCGAGCTGAAGAACGACTGAAGCAACTGGAACAGGAGATTGATGATCTGAGGAGAAGAAACACTGAGCTGGAGCAGCTTTCACACACAGACCATCACATCCATTTTCTCAAGAGTTTCCAGTCTCTCTCTTCTCCTCCTGGATCTACAGACTCATCCAGCATCACTGTCAGCTCTCGTATCTCTTTTGATGATGTTGGTAAATTGTCTCATCTGAGAAAGAAACTGGAGCATTTCTGCAGAGAAGAGATTGAAAAGATATCTAGTAAAGTGAGAGACATTAACATAATTTCCATCTCTGCTGAACCAAAGACTCGTCAGGAGTTCCTCCAATATTCCAGGCAGCTGACTTTtgatccaaacacagtgaataCGTCCCTGGTGTTGTCTAAAAAGAACAGAGTGATTGAATACACTGACAAAGTTCAGcagtatcctgatcatccagacagatttgattgtTGGCCTCAGGTGTTGTGTAGAGAGAGTGAGTGTGGACGCTTTTACTGGGAGGTTGAGTGGAATGGTTATATAgaaatatcagtgtcatataagagcatcagcagGAAGGGACGTGGAAATGAGTGTGTTTTTGGTTGTAAtgatcagtcctggagtttgttctgctctaGATCCAGGTTTTCATTCAGGCACAATAAACAACAGACTAAACTCCCAGTTCTGTCCATCTCCTCTAGAATAGGAGTGTATGTGGaccacagtgcaggaactctgtccTTCTACAATGTCTctgacacaatgagcctcatttACAGAGTCCACACCACATTCACTCAGCCGCTCTACCCTGGGTTTTGGGTTTTTGCTGGAAGCATCTTGTTCACAACTGACACTGTGATCTGACACTGATGTTGCAGATATTCTACAAACAACACGAACCATTAGAGATTCTCATGTCTTTTTTTATGCTAGATACTATTAACACAGCCCCCTTCTCCAACACCTTATCCCTTCCAGTTGCAAAATTAACAAATAAgcactaatgataataataacaatatggcagggaaaaaaagttttgtattttagtattttttttatgtaacatgAAATTGTGAACAACGACAAAGAAATAATACAATGTTTAGCTTGTTTTGTCTGTGTAGCCAAAACTTGCCATTTCCAAAATATATCATGGGTTTTCTATAGTACTAATTTACATAAAGTACATTGTTACTATGTTAAGAGCATAATTATGATTTGTTGAAATATTTTAGTCCTGTAATGAGTTCCtgtttttcataaaatatatgtgttttgtacagtaaataaatatatgtatgctAGCTTTGAGCAGCATTAAACAGTCAGTGTACATAAATGCCATGTCAGATTGAGCTTTTGTTTCATATTTGCAGCATGGACGAGACTTTTGTTAATACCATTTAACTGGAAACCAGTGATCTGATTGAATGAAATAATTGGTTAAAAAtaggtatttaaaataaaaacacaaagacttaaaaaattgactttaaaattgtttaaatcaaTTCAAGGGAGCAAATGTTGTCTATTAAGTAAAATCTGACCTTAATGTGAACCAAATCCTGTATTCTCTGTACATCACCGTGCATTATGGCTTTCTTTATGTTTAGCACTGCTTCCACCTGAACAGtctctataaaacaaaagaaatatcAAATATgatcaaaaaataaaacagtttgatatagtatacattaaataaatcattaacaatttTATTG

Function


symbol description
ftr11 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-195 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDARG00000038646

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00031417 False 1115 mRNA 0.45 4 42708674 42710206
TCONS_00031418 True 2533 mRNA 0.39 6 42708684 42713902

Neighbor


gene id symbol gene type direction distance location
XLOC_015803 NA coding upstream 62680 42645388 ~ 42645994 (+)
XLOC_015802 NA coding upstream 83784 42616861 ~ 42624890 (+)
XLOC_015801 march11 coding upstream 108561 42592572 ~ 42600113 (+)
XLOC_015800 BX294109.1 coding upstream 121639 42586738 ~ 42587035 (+)
XLOC_015799 BX005044.1 coding upstream 284875 42423684 ~ 42423799 (+)
XLOC_015805 ftr12 coding downstream 2093 42715995 ~ 42722040 (+)
XLOC_015806 basp1 coding downstream 10502 42724404 ~ 42748657 (+)
XLOC_015807 BX005083.1 coding downstream 59447 42773349 ~ 42781254 (+)
XLOC_015808 efr3a coding downstream 157929 42871831 ~ 42936509 (+)
XLOC_015809 NA coding downstream 259025 42972927 ~ 43010381 (+)
XLOC_015798 NA non-coding upstream 286030 42410888 ~ 42422644 (+)
XLOC_015810 BX511268.1 non-coding downstream 284900 42998802 ~ 42998919 (+)
XLOC_015811 NA non-coding downstream 424653 43138555 ~ 43163518 (+)
XLOC_015814 NA non-coding downstream 939718 43653620 ~ 43659284 (+)

Expression



Co-expression Network