XLOC_015805 (ftr12)


Basic Information

Item Value
gene id XLOC_015805
gene name ftr12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42715995 ~ 42722040 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031419
ATGGCAGAATCCACACTTTCCTTGGCTCAGGATCAGTTCAACTGTTCCCTCTGTTTGGAGCTGCTAAAGGATTCAGTGGCCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGACTGCTGGGATCAGGATGAGCAGAAGGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGACTGAAGTTGTGGAGAAACTCAAGAAGACCAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAATCTGCAGATGTGGAGTGTGGTGTTTGTACTGGAGATAAAAATAAAGCCATCAAGTCGTGTCTGGTGTGTCTGAACTCTTACTGCCAAAATCATCTTGAACAACACGAGAGTTTCTTCAGAGGTAAAAGACACAATCTGATGGACGCCACTGGACGACTGCAGGAGATGATCTGCCCTCAACATGAGAAACTACTGGAGTTCTTTTGCCGTACTGACCAGCGCTGTGTTTGTTATCTGTGTACAATGGATAAACACAAAAACCACAACACTGTATCAGCTACAGCAGAGAGGACTGACAAACAGAGTCAGTTGGCTGAGATGCAAAAAACAACCCATCAGCGAATCGAGGAGAAACAAAAGGAGTGTGTGGAGCTGAGAGAGGCTGTTGAGTCTTACAAGTGCTCTGCACAGGCAGCAGTGGAGGACACTGAGAGGATCTTTACTGAGCTCATCCGCTTCATTGAGAGAAACCGCTCTGGGTTGACACAGCTGATCAGAGATCAGGAAAAGGCTGCAGTGAGTGGAGCTGAAGGACGACTGGAGCGACTCGAACAGGAGATTGATGATCTGAGGAGGAGAGACGCTG
>TCONS_00031420
ATGGCAGAATCCACACTTTCCTTGGCTCAGGATCAGTTCAACTGTTCCCTCTGTTTGGAGCTGCTAAAGGATTCAGTGGCCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGACTGCTGGGATCAGGATGAGCAGAAGGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGACTGAAGTTGAGGAGAGACGCTGA
>TCONS_00031421
ATGGCAGAATCCACACTTTCCTTGGCTCAGGATCAGTTCAACTGTTCCCTCTGTTTGGAGCTGCTAAAGGATTCAGTGGCCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGACTGCTGGGATCAGGATGAGCAGAAGGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGACTGAAGTTGTGGAGAAACTCAAGAAGACCAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAATCTGCAGATGTGGAGTGTGGTGTTTGTACTGGAGATAAAAATAAAGCCATCAAGTCGTGTCTGGTGTGTCTGAACTCTTACTGCCAAAATCATCTTGAACAACACGAGAGTTTCTTCAGAGGTAAAAGACACAATCTGATGGACGCCACTGGACGACTGCAGGAGATGATCTGCCCTCAACATGAGAAACTACTGGAGTTCTTTTGCCGTACTGACCAGCGCTGTGTTTGTTATCTGTGTACAATGGATAAACACAAAAACCACAACACTGTATCAGCTACAGCAGAGAGGACTGACAAACAGAGTCAGTTGGCTGAGATGCAAAAAACAACCCATCAGCGAATCGAGGAGAAACAAAAGGAGTGTGTGGAGCTGAGAGAGGCTGTTGAGTCTTACAAGctggaagggcatctgctgtgtaaaacatatgctggatatgttggtggtttgTTCTGCTATGACAACCCActaagcgactaa
>TCONS_00031422
ATGGCAGAATCCACACTTTCCTTGGCTCAGGATCAGTTCAACTGTTCCCTCTGTTTGGAGCTGCTAAAGGATTCAGTGGCCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGACTGCTGGGATCAGGATGAGCAGAAGGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGACTGAAGTTGTGGAGAAACTCAAGAAGACCAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAATCTGCAGATGTGGAGTGTGGTGTTTGTACTGGAGATAAAAATAAAGCCATCAAGTCGTGTCTGGTGTGTCTGAACTCTTACTGCCAAAATCATCTTGAACAACACGAGAGTTTCTTCAGAGGTAAAAGACACAATCTGATGGACGCCACTGGACGACTGCAGGAGATGATCTGCCCTCAACATGAGAAACTACTGGAGTTCTTTTGCCGTACTGACCAGCGCTGTGTTTGTTATCTGTGTACAATGGATAAACACAAAAACCACAACACTGTATCAGCTACAGCAGAGAGGACTGACAAACAGAGTCAGTTGGCTGAGATGCAAAAAACAACCCATCAGCGAATCGAGGAGAAACAAAAGGAGTGTGTGGAGCTGAGAGAGGCTGTTGAGTCTTACAAGGTGAccgctctgccctgggttttGGACCTTGGATAG
>TCONS_00031423
ATGGCAGAATCCACACTTTCCTTGGCTCAGGATCAGTTCAACTGTTCCCTCTGTTTGGAGCTGCTAAAGGATTCAGTGGCCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGACTGCTGGGATCAGGATGAGCAGAAGGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGACTGAAGTTGTGGAGAAACTCAAGAAGACCAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAATCTGCAGATGTGGAGTGTGGTGTTTGTACTGGAGATAAAAATAAAGCCATCAAGTCGTGTCTGGTGTGTCTGAACTCTTACTGCCAAAATCATCTTGAACAACACGAGAGTTTCTTCAGAGGTAAAAGACACAATCTGATGGACGCCACTGGACGACTGCAGGAGATGATCTGCCCTCAACATGAGAAACTACTGGAGTTCTTTTGCCGTACTGACCAGCGCTGTGTTTGTTATCTGTGTACAATGGATAAACACAAAAACCACAACACTGTATCAGCTACAGCAGAGAGGACTGACAAACAGAGTCAGTTGGCTGAGATGCAAAAAACAACCCATCAGCGAATCGAGGAGAAACAAAAGGAGTGTGTGGAGCTGAGAGAGGCTGTTGAGTCTTACAAGTGCTCTGCACAGGCAGCAGTGGAGGACACTGAGAGGATCTTTACTGAGCTCATCCGCTTCATTGAGAGAAACCGCTCTGGGTTGACACAGCTGATCAGAGATCAGGAAAAGGCTGCAGTGAGTGGAGCTGAAGGACGACTGGAGCGACTCGAACAGGAGATTGATGATCTGAGGAGGAGAGACGCTGAGCTGGAGCAGCTTTCACACACAGACCATCACATTCATTTCCTCCAGAGTTTCCAGTCTCTCTCTGCTCCTCCTGGATCCACAGACTCATCCAGCATCGCTGTCAGCTCTCGTCTCTCTTTTGAAGATGTTGGTAAATCTTTGTCTCTTCTGAGAGAGAAACTGGAGCATTTCTGCAGAGACGAGTTAGAAATTATATCTGACAGAGttacaaacataaacataattcCCACCTCTGAGCCAGAGACAATTGAGCAGTTCCAACAATATTCCCGTCAGTTCACTTtggatccaaacacagtgaataatTACCTGGTGCTATCTGAAGATAACAGAGTAATTGATGTCATTCGAACATACCAGCAGTATCCTGATCATCCGGACAGATTTAATGCTTTTCTTCAGGTGTTGTGTAGAGAGAGTTTGTGTGGACGTTGTTACTGGGAGGTGGAGTGGAGTGGTTGGGTTGGTATATCAGTGTCGTATAAGAGCATCAGCAGGAAAGGACGGAGAACAGATTGTGAGTTTGGATGTAATGATCAGTCATGGAGTTTGTACTGCTCTGACTCCAGATGCTCGTTCTGGCACAATAACCAACCGACCAAACTGCCAGTAGTGTCCAGCTCGTCAAGAATAGGAGTgtatgtggatcacagtgcaggaattCTGTCCTTCTACAGCATCTctgacacaatgagcctcattcACAGAGTCCACACCACATTCACTcagccgctctgccctggATTTTGCTTAAATAGCACGCTTTAA

Function

symbol description
ftr12 Predicted to enable zinc ion binding activity. Is expressed in gill; liver; muscle; and pleuroperitoneal region.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-196 Predicted to enable zinc ion binding activity. Is expressed in gill; liver; muscle; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000053366

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031419 False 874 mRNA 0.48 3 42715995 42717210
TCONS_00031420 False 243 mRNA 0.50 2 42715995 42717211
TCONS_00031421 False 768 mRNA 0.46 3 42715995 42717899
TCONS_00031422 False 723 mRNA 0.47 3 42715995 42718815
TCONS_00031423 True 1644 mRNA 0.46 7 42715995 42722040

Neighbor

gene id symbol gene type direction distance location
XLOC_015804 ftr11 coding upstream 2093 42708674 ~ 42713902 (+)
XLOC_015803 NA coding upstream 70001 42645388 ~ 42645994 (+)
XLOC_015802 NA coding upstream 91105 42616861 ~ 42624890 (+)
XLOC_015801 march11 coding upstream 115882 42592572 ~ 42600113 (+)
XLOC_015800 BX294109.1 coding upstream 128960 42586738 ~ 42587035 (+)
XLOC_015806 basp1 coding downstream 2364 42724404 ~ 42748657 (+)
XLOC_015807 BX005083.1 coding downstream 51309 42773349 ~ 42781254 (+)
XLOC_015808 efr3a coding downstream 149791 42871831 ~ 42936509 (+)
XLOC_015809 NA coding downstream 250887 42972927 ~ 43010381 (+)
XLOC_015810 BX511268.1 coding downstream 276762 42998802 ~ 42998919 (+)
XLOC_015799 BX005044.1 non-coding upstream 292196 42423684 ~ 42423799 (+)
XLOC_015798 NA non-coding upstream 293351 42410888 ~ 42422644 (+)
XLOC_015811 NA non-coding downstream 416515 43138555 ~ 43163518 (+)
XLOC_015814 NA non-coding downstream 931580 43653620 ~ 43659284 (+)

Expression


Co-expression Network