XLOC_015807 (BX005083.1)


Basic Information

Item Value
gene id XLOC_015807
gene name BX005083.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42773349 ~ 42781254 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031425
CATACCTCTGCATCTTCGGGGCCAAAGGACCATGGTTTTACATTCAAATCTTTTTAATGCTCTACTGATGAAAAAAAGTCACCCGCACGTGCACCTTGAATGGCCCTGAGcttagtccccatctgggattgccacagtggcATAAACCACTAActtttccagcatttgttttatgcagcggatgcgcttccatCTACAACCcaaccctgggaaacatccatacactcattcacacacatacactatggtcaatcaATTTTAGCATTTCCCTctttttgggggaaaccagagcacccggaggaaacgcacgcgaacggggagaacatgcaaactccacacagaaatgccagctgaggcttgaaccagtgaccttctaccacctttaaatcaaagaaatataAACGTTCTGATATAAATCTGCACTTGTGATGAACATTGGTTAAACTCCTCTTTGGCATCTTAAGTAAAACAGCTCCATATGAAGCACATACAGTAAGGCCCGAGACAGAAATGATGCATCCGATTTTACAAAATAAAGACATTAGGAGTtatactaacatgaactaataatgaacaatacttgtacagcatttattaatcatagttcaacatttattattaaaataataatttaataatccaaaatgcttgttaatattagttaatacaCAGTGAGTTATCGAGAACTAACAACTCTatattcattaactaacattaacaaagatgaataaatactgtaataaaggtATTGTTCATTGATGATCCATGTTagctaataaataaactaatatcaaggattttaaattaaagtgttactgaaGTTAGTTGTGCATAACTCCCACTGCATCACAGGCTTATAAATAATAAGTTGGACATTAGTGTGTTGGTGTGGACAATACTATTGTTACTATTCATGATTTAAATATGAAAAGCCAC
>TCONS_00031426
ttagttttgccTCTAGATGTTTCTTTACTCTCAAAGTGTTGCTTTCTGTTAATTAGCATTTTATGAATCTTCAAGGACCATGGTTTTACATTCAAATCTTTTTAATGCTCTACTGATGAAAAAAAGTCACCCGCACGTGCACCTTGAATGGCCCTGAGGAGACAGTCCTGACACAGCCATGTACGTGCTGCCGATGGTCTTAATCTTCTCGATGTCCTGAAATCTTTCCTCCCCCAGCAGCTGTGCAGAATCACAGTCTTTAAATACCACAGGTTACATACATATGTGGTATTAAACTTTCATCAGCAGCTTCTGAGCAGGATTCTGACCTCATCAAAATCAGCGATGATCTCGTTGAGCAGCCGCAAACACTCCACGCCCTGGTTATTCATCTCCGTCTGAGAGTAAAAATCAGCAAAGCCTGGAATGGAGGCGAACATCACTCCCACCGTGTCATATGACTGCGAGTAGAGCTCCTAGAAGATGGAGATCACACAACAGAAACGTCAGATGAGTCCAGTTTCATTTCACACAACTGAGATTTAAATCAACAGTGAAATGTGGCTCTAATGAACTTCAGAACAGCAGTCAATGCATGATCTTGCTGAATACGTTGACTTTTAAAAATCTCTCCACAAGAGGGCAGTGCTGCTTTATATGTAACACACTTGACTGACTCAGAAGTGTCAGGCAAAACCGATGCAcctgata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097562

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031425 False 936 lncRNA 0.36 3 42773349 42774516
TCONS_00031426 True 711 lncRNA 0.43 3 42773384 42781254

Neighbor

gene id symbol gene type direction distance location
XLOC_015806 basp1 coding upstream 24692 42724404 ~ 42748657 (+)
XLOC_015805 ftr12 coding upstream 51309 42715995 ~ 42722040 (+)
XLOC_015804 ftr11 coding upstream 59447 42708674 ~ 42713902 (+)
XLOC_015803 NA coding upstream 127355 42645388 ~ 42645994 (+)
XLOC_015802 NA coding upstream 148459 42616861 ~ 42624890 (+)
XLOC_015808 efr3a coding downstream 90577 42871831 ~ 42936509 (+)
XLOC_015809 NA coding downstream 191673 42972927 ~ 43010381 (+)
XLOC_015810 BX511268.1 coding downstream 217548 42998802 ~ 42998919 (+)
XLOC_015811 NA coding downstream 357301 43138555 ~ 43163518 (+)
XLOC_015812 pard3ab coding downstream 423665 43204919 ~ 43389248 (+)
XLOC_015800 BX294109.1 non-coding upstream 186314 42586738 ~ 42587035 (+)
XLOC_015799 BX005044.1 non-coding upstream 349550 42423684 ~ 42423799 (+)
XLOC_015798 NA non-coding upstream 350705 42410888 ~ 42422644 (+)
XLOC_015814 NA non-coding downstream 872366 43653620 ~ 43659284 (+)
XLOC_015819 NA non-coding downstream 1154122 43935376 ~ 43936132 (+)

Expression


Co-expression Network