XLOC_015809


Basic Information

Item Value
gene id XLOC_015809
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42972927 ~ 43010381 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033641
ATTAAATGTCCACTCGAGGGTCGATGAGGGCTCTCATTGTCTCTCCATGTCTTCCGCTGTGAATGAGGGCACCTGTATGGAGAGCTGTTGACATGGGCAGCAGTGCTCGTATCACTAGTTTGAGAGTGGGAATCATCTCCTCCAGCAGTATATCAGGCGGGAAGCCCTTCTCCTCAGGGGTGGGATCAGGAAGACCACCAGTATCTGCAATTAAGCAACAAAACAAGTTCCCTGGCACACTTTCAGGATTGGCAGCAGGCATCATGACGCGGGCTCTCACTGTGGATGGCCTCGGAGTCGACAGACGAACACGATCCAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033641 True 320 lncRNA 0.53 3 42972927 43010381

Neighbor

gene id symbol gene type direction distance location
XLOC_015808 efr3a coding upstream 36418 42871831 ~ 42936509 (+)
XLOC_015807 BX005083.1 coding upstream 191673 42773349 ~ 42781254 (+)
XLOC_015806 basp1 coding upstream 224270 42724404 ~ 42748657 (+)
XLOC_015805 ftr12 coding upstream 250887 42715995 ~ 42722040 (+)
XLOC_015804 ftr11 coding upstream 259025 42708674 ~ 42713902 (+)
XLOC_015811 NA coding downstream 128174 43138555 ~ 43163518 (+)
XLOC_015812 pard3ab coding downstream 194538 43204919 ~ 43389248 (+)
XLOC_015813 nrp1b coding downstream 458860 43469241 ~ 43507278 (+)
XLOC_015814 NA coding downstream 643239 43653620 ~ 43659284 (+)
XLOC_015815 arhgap12a coding downstream 738840 43749221 ~ 43797218 (+)
XLOC_015803 NA non-coding upstream 326933 42645388 ~ 42645994 (+)
XLOC_015802 NA non-coding upstream 348037 42616861 ~ 42624890 (+)
XLOC_015800 BX294109.1 non-coding upstream 385892 42586738 ~ 42587035 (+)
XLOC_015799 BX005044.1 non-coding upstream 549128 42423684 ~ 42423799 (+)
XLOC_015819 NA non-coding downstream 924995 43935376 ~ 43936132 (+)
XLOC_015821 BX005060.1 non-coding downstream 1362840 44373221 ~ 44386693 (+)
XLOC_015822 NA non-coding downstream 1372791 44383172 ~ 44385238 (+)

Expression


Co-expression Network