XLOC_015815 (arhgap12a)


Basic Information

Item Value
gene id XLOC_015815
gene name arhgap12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43749221 ~ 43797218 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031437
CCGGAGAAGTTCGCTCGCGCCGCGGCTCAGGAACAAGGAACTTCGACGCTTAACTGCCCACCAAGACCGACGAGCCTTTAAATCAGCAAGTTTATGTCGCTGTAGCCTGCCACACACCCGGAAAAGCAGCTCAGCTGATTCCATATTAACCCACCGCACCCCATCATGCTCCTCTCCCCTAGTTTCTGACCTCTGACAGCAATGGCGGACCGCTCGATTGCTCCGGGTCAGACGTACATAGAGGTGGAGTACGATTACGATTACAAGTCTAAAGACCGTTTGATCACCATTAAACATGGTGAAAGTTACCTGCTTGTGAAGAAGACCAATGATGACTGGTGGCAGGTTCGCAAGGACGATGCCAGTAAGCCATTTTATGTTCCAGCGCAGTATGTACGAGAGGTGCGACGGGCACTCATGCCCCCTCCTAAACCCCTGAATATAGCAGGCAGAGGGGGGCCTGCACCCAACCGACCCTCTGCACTGGAGATCCAGCGGCCAAATGACAACAAAAAGAGCCCGTGTCCGTCTCCCTCAAGCACTGCTTTACTGCCGCCCAGGGATGACCGAGGCAGTCCGGTTAGCCCAACTAGACATTTACCTCCCGCACAAATGAACACTTTCCCTGGCTCGCTTCCTTGCTTCAGAGCGGAGTCTCCTGGTAGCAAACTGGATGGAGAGAGGGATAAAGACAAAGATTCGGAGAGGAAGGATCGAGGTGAAAAAGCCGCAGTTCAAGAAGAGCTTGCTGAAGAAGGAGGTGATTCGGATAAAAACCGGATTGACTCTGAATCCGGGGATGAACTCAGCAGTGGTTCCACTGATAACCTACAGTCTTTAGGTTCGGGTCAGGGCAGGCCTGACTCTCCTGTCTACACAAACCTGCAGGAAATGAAGATTTCCCAGTCCTCCACTCCTCCACTGCCGTCCTCCTCTCCGATCCACACCAATGGCGACTGGGAGACTCATAAAGACCAGAATGGCAGACACTACTACTACAACCGCAGCACGCAGGAGAGGACCTGGAAACCCCCACGGGCACGGGACAGCCTTCCCAGGAAAGAGGAGAAACACGACATGACTGACACTGAGGTTTTGTCGTCGGAAGAAAACTGTCTGAGCAGCCAATCAGACAGCCAGTACGGTTCGCCCCCTAGAGGCTGGTCTGAGGAAATGGATGAGCATGGACACACTCTTTATGTGTGTGACTATACTAATGAGAAGtggtTGAGACACACAGATGAGCGAGGCCGGCTGTATTACTACAGCGCAGATGGCTCCAGATCTGAATGGGAGCTTCCTAAAATTGGTCTCAAATCACAGTCCAACCACACACCTCTGATGCCAGGAGATTTGCACAAAACCCGTAGTCTTGACCGCAGACTACCAGATCCCATTCCTATCAGCAGGACACAGAGACACAGCATATATTCCCATGAGACCAATGACAAGTTAAAGCAGAAATTCGTCAAGGTCCGGCAATCCTTCCTTCCGCGCCGCAAAACCACCTTGCGCTCTCACCCTTATTTTCCACAACCGTCAGAGAAATGTGCCACTTTAAACATGACTAAAATCACTGAACATGGAAAGAAAGTCCGGAAGAACTGGACCTCCTATTGGACAGTTTTGCAAGGTTCATTATTGATATTTAATAAGGGCCAAGGAGGCGGGTCTGGCTGGTTTGGAAGAGACCAGAAGAGTTCAGTGGAGTACAGTGTGGATCTCAAAGGAGGGTCGGTGGACTGGGCGTCTAAAGACAAATCCAGCAAGAAACATGTTCTAGAGCTGAAGACCCGGCAGGGCACGGAGTTACTCTTGCAGTCAGATAGTGATGGCCTCGTCAATGACTGGCACAAAGCTTTGACCGAAGCCATTCACACATATATGTGGGAGTCTGATGAGGCCATTGAAGAAGACATGCCAGAATCTCCTGAAAATGAGAAACATGACAaggaaaaagacagaaaaaactcCAAGAAGGCCAgagATATTAAGAAAACTGCAAGCATGGACAATGCAgaacagaagaagaagaacaaactGGTGGTTCTCCTCCTTGGCAGACCTACTttacaagctgtcaaagacaaaGGCTACATTAAAGACCAAGTGTTCGGCTGCAGCTTGAGCAGTCTGTGTCAGAGAGAAAACTCCACTGTCCCCCGCTTTGTCTGGTTGTGCATTGAGCAAGTGGAGAAGAACGGGTTAGGAGTGGATGGTTTGTACAGAGTCAGTGGAAATTTGGCCATTATACAAAAACTGAGATTTGCTGTTAATCACGAAGAGAAAATAGATTTAGGTGACAGTAAATGGGAGGACATTCACGTGACCACTGGAGCTCTGAAGATGTTTTTCCGTGAGCTGCCAGAGCCTCTGTTCACCTATACGTTCTTCAGTGATTTCATCTCTGCTATCAaaATGCCAGATTATAAGCAGAAAGTTCAGACGGTTAAGGATCTGATGAAGAAGTTGCCCCGgccaaaccatgacaccatacaGGTTCTCTTCAAACACCTGAAGAAAGTGATCCAGCATGTGGACGAGAACAGGATGACCACTCAGAGTGTAGCCATTGTGTTCGGCCCGACGCTCCTCCGCCCCGAGATAGAGACAGCAAATATGGCAGTGCACATGGTCTACCAGAACCAGATCGTTGAGCTCATTCTTATGGAGTATGACACTATATTTGGCAGGTAGGTCACACACGCACAGGAAACCTTTGACCAAACTCAACGGGCTAGTCACTGCTGAAGACCCACTGACTGAACAGCCCACTGACTGCCAGTGTTTTGGTACGTTTACATGAAAGAACTGCACGTATTGGAAAAATCCATTCTGGCTTCAGCTAAAACAGACGAGACTTCTTCTCAAATTTTAATGGACTAAGTTATGGTCCCGTTTTTCTTGGTTGGAATTAATTTTTATACACACCCAAATCCATTGGACTAAGGCCTTTACTGGATTTGTTTGGAGCAATGAGGATTAACATATCAACATTTTCTGTCCGACTGAAAACGTGATGCTCATGGGAGAGAACTGATGTGTTTCATTTTCCGTTCACTTTTAGTACGACTTTTTGCATTGCATATTTCCATGAAAATACTCTCATACGGCTTGTCGACTGAATGTCTGACATGACAGACGTTATCCTAAACTAAAACCTTGGATGGGTTACATTTTCCTCTGGCCTGTTGGAAGTGACCGCTGAAATCACTGGAGTTATTATGTAGATCCTTTATGGACCACCTTTTTTGGGagcccacattttttaaatatcgaTTCAGTATCAAAGGACGTACAAGCCCTTGTTTGCGAGTCTGTAGGTGTACTTCAGACTGTGGGAGTACTGTTATCCTGGTTCTTTACAAAGGCACTGGAATGAAATGTGTGCACATTTAACCCTGTTAAGAGGACATTAGACCCACTGCTTTTCCTTACCAAGACCCAAGACATGCATTGGCAACCTATTTATCTTGAGAATACAGTGCGCTGTAGATAAAATACCACTTGAAGATTTTTGTATTAGAAGAATGTGGCAGAAATTGTCAACACTGAGCTTTCTATTGATGTCCATGTGCTTGTGATGATGAGTTAAATGCACATGGAAGTAAAGGCAACACAATTGTGTTGATGCTAGAGACtggtttattaaagtttttatgaGAGTTATTACAGAAATGGCTATTTGGAAAAAGGCTGTCGAATGTGATTCGTCAAATATTCTGCTTCATCACAGAACTTTGTCTTGATGAAAATAAAGTTGACAAGGCAAACCA
>TCONS_00031438
GGCAGGTTCGCAAGGACGATGCCAGTAAGCCATTTTATGTTCCAGCGCAGTATGTACGAGAGGTGCGACGGGCACTCATGCCCCCTCCTAAACCCCTGAATATAGCAGGCAGAGGGGGGCCTGCACCCAACCGACCCTCTGCACTGGAGATCCAGCGGCCAAATGACAACAAAAAGAGCCCGTGTCCGTCTCCCTCAAGCACTGCTTTACTGCCGCCCAGGGATGACCGAGGCAGTCCGGTTAGCCCAACTAGACATTTACCTCCCGCACAAATGAACACTTTCCCTGGCTCGCTTCCTTGCTTCAGAGCGGAGTCTCCTGGTAGCAAACTGGATGGAGAGAGGGATAAAGACAAAGATTCGGAGAGGAAGGATCGAGGTGAAAAAGCCGCAGTTCAAGAAGAGCTTGCTGAAGAAGGAGGTGATTCGGATAAAAACCGGATTGACTCTGAATCCGGGGATGAACTCAGCAGTGGTTCCACTGATAACCTACAGTCTTTAGGTTCGGGTCAGGGCAGGCCTGACTCTCCTGTCTACACAAACCTGCAGGAAATGAAGATTTCCCAGTCCTCCACTCCTCCACTGCCGTCCTCCTCTCCGATCCACACCAATGGCGACTGGGAGACTCATAAAGACCAGAATGGCAGACACTACTACTACAACCGCAGCACGCAGGAGAGGACCTGGAAACCCCCACGGGCACGGGACAGCCTTCCCAGGAAAGAGGAGAAACACGACATGACTGACACTGAGtggtTGAGACACACAGATGAGCGAGGCCGGCTGTATTACTACAGCGCAGATGGCTCCAGATCTGAATGGGAGCTTCCTAAAATTGGTCTCAAATCACAGTCCAACCACACACCTCTGATGCCAGGAGATTTGCACAAAACCCGTAGTCTTGACCGCAGACTACCAGATCCCATTCCTATCAGCAGGACACAGAGACACAGCATATATTCCCATGAGACCAATGACAAGGACACCAAAACTGGCTCACCCGACTCCGACTCCTCCTGCCCTTCCTCTCCTAAACCTCCCCATTCTCCGTCAGAGAAATGTGCCACTTTAAACATGACTAAAATCACTGAACATGGAAAGAAAGTCCGGAAGAACTGGACCTCCTATTGGACAGTTTTGCAAGGTTCATTATTGATATTTAATAAGGGCCAAGGAGGCGGGTCTGGCTGGTTTGGAAGAGACCAGAAGAGTTCAGTGGAGTACAGTGTGGATCTCAAAGGAGGGTCGGTGGACTGGGCGTCTAAAGACAAATCCAGCAAGAAACATGTTCTAGAGCTGAAGACCCGGCAGGGCACGGAGTTACTCTTGCAGTCAGATAGTGATGGCCTCGTCAATGACTGGCACAAAGCTTTGACCGAAGCCATTCACACATATATGTGGGAGTCTGATGAGGCCATTGAAGAAGACATGCCAGAATCTCCTGAAAATGAGAAACATGACAagg
>TCONS_00031439
TCCGCTCTAGCATCCTGCATCCATCCCAGTTCAGAGTGGCTGCCGAGTCTCCCGTTATAGGATATTCTGCACTGAGCAGCACTGCAGAGACACCATGTACCCAGAGGAACCGTCTTTAGGTTCGGGTCAGGGCAGGCCTGACTCTCCTGTCTACACAAACCTGCAGGAAATGAAGATTTCCCAGTCCTCCACTCCTCCACTGCCGTCCTCCTCTCCGATCCACACCAATGGCGACTGGGAGACTCATAAAGACCAGAATGGCAGACACTACTACTACAACCGCAGCACGCAGGAGAGGACCTGGAAACCCCCACGGGCACGGGACAGCCTTCCCAGGAAAGAGGAGAAACACGACATGACTGACACTGAGGTTTTGTCGTCGGAAGAAAACTGTCTGAGCAGCCAATCAGACAGCCAGTACGGTTCGCCCCCTAGAGGCTGGTCTGAGGAAATGGATGAGCATGGACACACTCTTTATGTGTGTGACTATACTAATGAGAAGtggtTGAGACACACAGATGAGCGAGGCCGGCTGTATTACTACAGCGCAGATGGCTCCAGATCTGAATGGGAGCTTCCTAAAATTGGTCTCAAATCACAGTCCAACCACACACCTCTGATGCCAGGAGATTTGCACAAAACCCGTAGTCTTGACCGCAGACTACCAGATCCCATTCCTATCAGCAGGACACAGAGACACAGCATATATTCCCATGAGACCAATGACAAGTTAAAGCAGAAATTCGTCAAGGTCCGGCAATCCTTCCTTCCGCGCCGCAAAACCACCTTGCGCTCTCACCCTTATTTTCCACAACCGTCAGAGAAATGTGCCACTTTAAACATGACTAAAATCACTGAACATGGAAAGAAAGTCCG

Function

symbol description
arhgap12a Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Is expressed in ectoderm. Orthologous to human ARHGAP12 (Rho GTPase activating protein 12).

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050809-38 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Is expressed in ectoderm. Orthologous to human ARHGAP12 (Rho GTPase activating protein 12).

Ensembl:

ensembl_id ENSDARG00000008548

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031437 False 3776 mRNA 0.47 18 43749221 43797218
TCONS_00031438 False 1464 mRNA 0.52 10 43750899 43788045
TCONS_00031439 True 876 mRNA 0.51 7 43755274 43784018

Neighbor

gene id symbol gene type direction distance location
XLOC_015814 NA coding upstream 89937 43653620 ~ 43659284 (+)
XLOC_015813 nrp1b coding upstream 241943 43469241 ~ 43507278 (+)
XLOC_015812 pard3ab coding upstream 359973 43204919 ~ 43389248 (+)
XLOC_015811 NA coding upstream 585703 43138555 ~ 43163518 (+)
XLOC_015809 NA coding upstream 738840 42972927 ~ 43010381 (+)
XLOC_015816 nlrb5 coding downstream 54765 43851983 ~ 43871387 (+)
XLOC_015817 gbp3 coding downstream 97150 43894368 ~ 43918874 (+)
XLOC_015818 si:ch211-195h23.3 coding downstream 123243 43920461 ~ 43955410 (+)
XLOC_015819 NA coding downstream 138158 43935376 ~ 43936132 (+)
XLOC_015820 zgc:152670 coding downstream 551255 44348473 ~ 44362943 (+)
XLOC_015810 BX511268.1 non-coding upstream 750302 42998802 ~ 42998919 (+)
XLOC_015807 BX005083.1 non-coding upstream 967967 42773349 ~ 42781254 (+)
XLOC_015821 BX005060.1 non-coding downstream 576003 44373221 ~ 44386693 (+)
XLOC_015822 NA non-coding downstream 585954 44383172 ~ 44385238 (+)
XLOC_015823 NA non-coding downstream 598096 44395314 ~ 44400668 (+)
XLOC_015827 BX323035.2 non-coding downstream 767160 44564378 ~ 44564494 (+)

Expression


Co-expression Network