XLOC_015819


Basic Information

Item Value
gene id XLOC_015819
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43935376 ~ 43936132 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033653
TAGTgtgggatgtcctgtgtaagaactgaccattgtttttttctacttatttaaaatgcggttgTAATGGGGCGATCCCCAAAGGGGAGGGGTTTCCCACTCGTATGCGTGTAGTGGGGGATCCCCAAGGGGGAGGGGTTTCCTCACTATGTTTAGGTGAATGGAGTTAGAAATTAAGCTCGCCACCCCTTTAAAAGTGTGGAGGTTTTGCTTCCGTTATATCCCTGGCATGGAATAGTGGCAGTGTGTTGAGTGCGTGCAAACTTTTGATGTGCGTTAAGCATTGAGCGTTGAGCAGTAAGCCTGCAGTGTTTAGAAAAACCTGTAATTCTGTTTCTTTGGCCTGCGGAAGTGCAATCGCATCAGCAAGTAACGGTATGTCTCTGTTTATGTCTTTGGCTATTTCTGGCGAGTTTTAGAgctgttaattaataataaataattcttttaGCTACATCCATGtatgattggtggattgctcACCATTTGCGTTAAGAGCCAGTTGACTGGGCTGCGGGTAAGTTTCTATTTGAGAGTCTGTAAATGTTTTATCtagaaatatgattttaaaacgtTAACATGCGAATGAATATTGACTggttgttttatagagagcccgTTGCTGTTTTGCTGCTGTCTGGCGACCCGTTTGTGCTACGGAGGGGCGATTTCACTTTCCTTCTCGGCACCTGATTGTGTGTGACTCGGTTGCGtcaaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033653 True 757 lncRNA 0.44 1 43935376 43936132

Neighbor

gene id symbol gene type direction distance location
XLOC_015817 gbp3 coding upstream 16502 43894368 ~ 43918874 (+)
XLOC_015816 nlrb5 coding upstream 63989 43851983 ~ 43871387 (+)
XLOC_015815 arhgap12a coding upstream 138158 43749221 ~ 43797218 (+)
XLOC_015814 NA coding upstream 276092 43653620 ~ 43659284 (+)
XLOC_015813 nrp1b coding upstream 428098 43469241 ~ 43507278 (+)
XLOC_015820 zgc:152670 coding downstream 412341 44348473 ~ 44362943 (+)
XLOC_015821 BX005060.1 coding downstream 437089 44373221 ~ 44386693 (+)
XLOC_015822 NA coding downstream 447040 44383172 ~ 44385238 (+)
XLOC_015823 NA coding downstream 459182 44395314 ~ 44400668 (+)
XLOC_015824 kcnab1b coding downstream 490477 44426609 ~ 44510752 (+)
XLOC_015811 NA non-coding upstream 771858 43138555 ~ 43163518 (+)
XLOC_015809 NA non-coding upstream 924995 42972927 ~ 43010381 (+)
XLOC_015810 BX511268.1 non-coding upstream 936457 42998802 ~ 42998919 (+)
XLOC_015807 BX005083.1 non-coding upstream 1154122 42773349 ~ 42781254 (+)
XLOC_015827 BX323035.2 non-coding downstream 628246 44564378 ~ 44564494 (+)
XLOC_015832 NA non-coding downstream 1048351 44984483 ~ 44989293 (+)

Expression


Co-expression Network