XLOC_015831 (alg3)


Basic Information

Item Value
gene id XLOC_015831
gene name alg3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 44972720 ~ 44981344 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031469
GTGTTTCCAAATTCAGCGAGTTCCCGTTTGTCGCTGACTTCTCGAAGGCGGCCAACATGGCAGGAGGAAAGAAGAAATCCTCTACGGCACCGTCAAGATTTCAAAAAACACTGTCCTCCATATGGCAGGACAAGCATATGGTGTTGTTTAAACCCGAGTACACGCTGCTGGTCACTGCCGTCCTTTGGTTCTTGGAAATTGCGATCAACATATGGGTGATCCAGAAAGTTTCATATACAGAAATCGACTGGAAGGCGTACATGGATGAAGTGGAGGGAGTTATTAATGGCACATATGATTACACACAACTGAAGGGCGACACGGGACCCCTGGTgtatCCAGCTGGTTTTGTATATATCTTCACAGGACTGTATTATCTCACTGATCATGGGCATAACATTCGTTTGGGTCAGTATGTGTTTGCTGTGTTCTACCTCATCAATCTCCTGCTCGTGATGCGCATTTACCATCGCACCAAAAAGGTTCCTCCATATGTGTTTTTCTTCATCTGCTGTGCTTCATATCGCATTCACTCCATCTTCATCTTGCGTCTCTTCAATGATCCGGTGGCCATGATGCTGTGTTTTGGGGCCATCAATCTCTTTCTGGACGGCCGCTGGACTCTAGGATGTGCTCTTTACAGTTTAGCTGTGTCTGTGAAGATGAATGTTCTGCTTTTCGCTCCTGgtctcctcttcctcctgctGTGTGAGTTTGGTCTGTGGAAAACTTTACCCAGACTCGCTCTCTGTGCTGTCATTCAGCTGGTTTTGGGACTGCCGTTCCTTTTAGTGAACCCTGTTGGGTATGTCAGCCGGGCCTTTGACCTGGGCCGGCAGTTTCTGTTTAAGTGGACTGTGAACTGGCGCTTTCTTCCTGAGGATGTGTTCTTGAATCGATACTTTCACTTGGCTTTGCTTTTGGCTCACATTACTACACTGCTTCTGTTCGCTCTGAAGAGATGGAAAAGGTCTGGGAGCAGTATTTGGACTATACTAAAAGATCCATCTGAGAGAAAGGAGACTGCACATAAAGTTAATGCCGATCAGATGGTTCTTATTCTGTTTACATCTAACTTCATTGGCATGTGCTTCAGCAGATCTCTGCATTATCAGTTTTATGTCTGGTATTTTCATACGCTGCCCTACCTGCTGTGGAGTGGAGGAGTGAAGAAGCTGGCACACCTACTCAGAGTGTTGATTTTGGGTCTGATAGAGCTGTCCTGGAACACGTATCCATCCACCAACTACAGCTCTCTGTCTCTGCACGTCTGCCACCTCATCATCCTCCTCTGTTTATGGCTCAACCCCAATCCAGCTTCTCCATCTCATAGGTCAGAAAATAAGGCTAAGAGTCACTGAAACCCCTGGTCTGACTGGGAGCCTCGCTGTGTGGGACAATCACTGCTCTACAGCTCCTACACCACAGTGAAATACAAGGGTGTTCAGGGACCCGTGCCATCAAATGGATGTTGAAATGGTTTGGATATGAAGgaagtgtgaagttaatatattGGGGAACAGAGTTTACAGTGCTTCTCAGGATGATTAAGGACTATTGTGAGGCTTGGGCTGGGATGACAAAGCTGGTGGGAAATTTGAGTGTCAGTTTTGATTGGCAGGTCATTTTAACGACACACTTATTTTTGTGCAGCATGTCGAGGCAAAGGACATGAAGGTAAACTTAGTCTTCTATCTTTTATGGACAGCTATGGAAAGAGTACTCGAAAATTCTGTTTATGAAGACGTGCTTCTACTACTATTGATTGGGAAtgataaaattttgttttttttcttaatgtctAATAACATCTCTTcctcataaaaaaaatattgtgcaatCACTGATCTTGGTAAGACTTTGTTTTGATGCTCCCTATTGTACATTTTATTGACTAAAAGTTGCACTACATGCCAACGAATTCTCATtggattattagtagactgtctgcttgcttaatatctgctgatactgcccTTTCAACAGACTGACTGTAAAAAACTTTGCAAATgcatgtcagcttacactaaccctaaccccaattgaacagtctacttatgatctaatgagaattagttggcctGTAGATGCAATGTTACTTGCATTCAAGAAAATGCGTTAAAgtggccatcaaaataaagtgatagcCTGATCTTTATAGAATGACTCTCTACAGTATATAGACCAGTGACTGTAATTGTGAGGTTTTTATATAGAAGcagaaaatgaccaaaaaaactttgcaaattaaaattaaatcatgaTTATTCTgccaaa
>TCONS_00031470
CTGGTTTTGGGACTGCCGTTCCTTTTAGTGAACCCTGTTGGGTATGTCAGCCGGGCCTTTGACCTGGGCCGGCAGTTTCTGTTTAAGTGGACTGTGAACTGGCGCTTTCTTCCTGAGGATGTGTTCTTGAATCGATACTTTCACTTGGCTTTGCTTTTGGCTCACATTACTACACTGCTTCTGTTCGCTCTGAAGAGATGGAAAAGGTCTGGGAGCAGTATTTGGACTATACTAAAAGATCCATCTGAGAGAAAGGAGACTGCACATAAAGTTAATGCCGATCAGATGGTTCTTATTCTGTTTACATCTAACTTCATTGGCATGTGCTTCAGCAGATCTCTGCATTATCAGTTTTATGTCTGGTATTTTCATACGCTGCCCTACCTGCTGTGGAGTGGAGGAGTGAAGAAGCTGGCACACCTACTCAGGTCAGAAAATAAGGCTAAGAGTCACTGAAACCCCTGGTCTGACTGGGAGCCTCGCTGTGTGGGACAATCACTGCTCTACAGCTCCTACACCACAGTGAAATACAAGGGTGTTCAGGGACCCGTGCCATCAAATGGATGTTGAAATGGTTTGGATATGAAGgaagtgtgaagttaatatattGGGGAACAGAGTTTACAGTGCTTCTCAGGATGATTAAGGACTATTGTGAGGCTTGGGCTGGGATGACAAAGCTGGTGGGAAATTTGAGTGTCAGTTTTGATTGGCAGGTCATTTTAACGACACACTTATTTTTGTGCAGCATGTCGAGGCAAAGGACATGAAGGTAAACTTAGTCTTCTATCTT

Function

symbol description
alg3 Predicted to enable dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity and glucosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to act upstream of or within protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Id. Orthologous to human ALG3 (ALG3 alpha-1,3- mannosyltransferase).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0006487 protein N-linked glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046527 glucosyltransferase activity molecular_function
GO:0000030 mannosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0052925 dol-P-Man molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko00513 Various types of N-glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-050522-334 Predicted to enable dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity and glucosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to act upstream of or within protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Id. Orthologous to human ALG3 (ALG3 alpha-1,3- mannosyltransferase).

Ensembl:

ensembl_id ENSDARG00000053155

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031469 False 2277 mRNA 0.43 9 44972720 44981344
TCONS_00031470 True 793 mRNA 0.45 4 44977889 44980765

Neighbor

gene id symbol gene type direction distance location
XLOC_015830 ece2a coding upstream 46430 44781185 ~ 44926290 (+)
XLOC_015829 yeats2 coding upstream 279405 44615000 ~ 44693315 (+)
XLOC_015828 klhl24a coding upstream 368265 44571200 ~ 44604455 (+)
XLOC_015827 BX323035.2 coding upstream 408226 44564378 ~ 44564494 (+)
XLOC_015826 MTERF4 coding upstream 415402 44545912 ~ 44557318 (+)
XLOC_015832 NA coding downstream 3139 44984483 ~ 44989293 (+)
XLOC_015833 prss56 coding downstream 67946 45049290 ~ 45058240 (+)
XLOC_015834 si:dkey-76d14.2 coding downstream 87022 45068366 ~ 45070442 (+)
XLOC_015835 chrng coding downstream 100145 45081489 ~ 45097743 (+)
XLOC_015836 CU929150.2 coding downstream 119619 45100963 ~ 45113236 (+)
XLOC_015823 NA non-coding upstream 572052 44395314 ~ 44400668 (+)
XLOC_015821 BX005060.1 non-coding upstream 586027 44373221 ~ 44386693 (+)
XLOC_015822 NA non-coding upstream 587482 44383172 ~ 44385238 (+)
XLOC_015819 NA non-coding upstream 1036588 43935376 ~ 43936132 (+)
XLOC_015843 NA non-coding downstream 451238 45432582 ~ 45433628 (+)
XLOC_015846 NA non-coding downstream 479789 45461133 ~ 45461974 (+)
XLOC_015847 NA non-coding downstream 486723 45468067 ~ 45468585 (+)
XLOC_015862 NA non-coding downstream 1075462 46056806 ~ 46060001 (+)

Expression


Co-expression Network