XLOC_015835 (chrng)


Basic Information

Item Value
gene id XLOC_015835
gene name chrng
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45081489 ~ 45097743 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031473
TGCGTTTCCCATCACAAAACACCCACTAGGTACTGGAGAGCCTTCAACATTAATGTTTCTCTCAGGATTTCAACCATGGATCAAAACCTTTCCTCAAAAATCATCTGGTTATGGATCCTCCTGTTTCGCTTCTCTGGAGCTCTCTGTAATCTGGAAGGATCCCTGCACAGAGATCTCATGGTGGGATACAACAAGAACATACGACCTGTGGAGAGCCATGAAGACATCATTGATGTGAAGATCAAGATGACCCTCACCAACCTCATTTCTCTGAATGAGAAAGAGGAGACGCTCACTACTTGTGTTTGGATTGAAATGCAATGGCGGGATTATCGACTGCGCTGGGCAAACAGGACAGGCTTTGAGGTCTATGAGAACATCACCCGCATGCGTCTTCCATCCAAAACCATCTGGCTGCCTGATATTGGCCTGGAGAACAAtgTGGATGGGCGTTTTGAAGTGGCGCTCTATGCTAACACACTGATAGATCCTGATGGCAGTGTGTACTGGTTGCCTCCTGCCATCTACCGAAGCTCCTGTGCCATCAAAGTCAACTATTTTCCCTTTGATTGGCAGAATTGCAGCATGGTGTTCAGGTCTCAGACATACAATTCCAATGAAATTACCCTGATGCTGTCGGACGAGGACAACGTCACTATGGAATGGATTGAGATCGACCCAGAGGCTTTTACTGagaaTGGAGAATGGATGATTAAGCACCGCCCTGCAAAAAAGGTTATCAACAAGCGATACAGACCGGATGAGCTGGAGCACCAGGAGATCATCTTCTTTCTCATCATCCAGAGGAAACCACTCTTCTACGTCATCAACATTATCGTGCCCTGTGTGCTCTTCTCGTCCCTCGGGCTGCTCGTCTACTTTCTGCCTGCCAAAGCTGGAGGACAGAAATGTACTATGACCATCTGTATTCTGCTCGGCCAGACTGTCTTCCTGTTCCTTATCGCTAAGAAAGTGCCAGAAACATCACAAGCGGTTCCTCTCATTGGGAAGTATCTGATGTTTGTGATGTCGGTGACCACAATAACTGTGATGAACTGTGTGGTGGTGTTAAACGTCTCTCTGAGAACTCCAAACACTCACCCCATGAGCAACACCATCAGAAAGGTGTTGTTGAACATCCTTCCTCGAGTGCTGAGGATGACGATGCAGCGCTGGACACCTGAGCAGGAGGAAGGGGATTTTAAGATGTTCGCTCTGGGCAATGGAACTCCGCTCCGCCGCAGGAGACGCAGCTCTTTAGGGTTAATAGCAAAGGCGGATGAATACATGTTCAGAACGGCACGATCCGAGCTCATGTTCAGCCGACTGAAGGAGAGGAAGGGGCTGCTGAAGAACACTCTGGAGAAAATACAGAATGGTCTGGGGGGAAACACGGCACAGGATCTGGAGTGCAGTTTAGCAGCGGCCTCCCCTGAAGTGCAGCAGTGTGTGTCCTCCTGCAAACACATCGCAGAAAGCACCAAGCATCAAAATGACTTCCAAAGTAAAAATGAGGAATGGTTTCTGGTCGCCAGGGTGATTGACAGGATGTGCTTCTTTGTCATGGCGCTGCTGTTTATCCTGGGCACCATCGGAATTTTCCTGACAGGACATTTTAACCAGGCGCCGTCCCAACCCTTCCCTGGAGATCCCAAAAAATATCTTCCTGAAATCTCAGCTGGAGACATCCCCGGCTGAACAAAGGTGTAAAACAACATGGCGGACACAGAGAAACTCCAGCAGAAGACTGGAGCACTTGCCTGAAGAGACTCTGGAGATAAAAATGTGGTGTTTTGCTGTAATTTAACTCTCAGCACTGCAATATGGCTGCACTGTAGCACTAATGAATGTGATCTTCAGAGAAGAACGCTGGTTGAATTTGGAGCCATCCAAGACTCGGAAAGGCTTTGTTGAGTTGCTTGTAATAAGGAAAGTCATGTTATTTGCTTGTCCATTTCTTTATCAACCCTACTGTTTGATATTGCTTCAACATTTGATTATTTTCCTGAGATaaatatgtaacatttaaaagcATGGTCTGCTACATTTCTAGCCTTAAGCCACTATGCTTTGTCTGTTATAGATCGTTTGATAGTACTCAGTGCGTTTTTCACCTACATCGCATCAGTGTTAAGTTACTTCagtatttatttactaaatacaTGATTACAGTCGTATTTAAACAACCTTTCTAATTCAGTTGAGAAATTCATCTTGATTACTCAATAATTACTTAAATTACttgactaaatattatttataaatctcagtacacaaaaaataaaattcttatTTCCTTCAATTCAAACACTGCCTTTTGTTTGAAAAAATTAACATTCAAGAGTGTaagtaatatttttacaaatgcacaaaacttttcaaaaaagtAATAACACCATATTTCACATATAATAGCataaatttaacttttaattaaaaactttttttgttgtagAGAAATTGAGTTGATATGCAAAATGTCtgaataacacaaaataaatatttacaatgactCAGCTA

Function

symbol description
chrng Contributes to acetylcholine receptor activity. Acts upstream of or within cholinergic synaptic transmission. Part of acetylcholine-gated channel complex. Is expressed in musculature system. Human ortholog(s) of this gene implicated in multiple pterygium syndrome. Orthologous to human CHRNG (cholinergic receptor nicotinic gamma subunit).

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022848 acetylcholine-gated cation-selective channel activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-030131-3805 Contributes to acetylcholine receptor activity. Acts upstream of or within cholinergic synaptic transmission. Part of acetylcholine-gated channel complex. Is expressed in musculature system. Human ortholog(s) of this gene implicated in multiple pterygium syndrome. Orthologous to human CHRNG (cholinergic receptor nicotinic gamma subunit).

Ensembl:

ensembl_id ENSDARG00000086647

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031473 True 2520 mRNA 0.43 12 45081489 45097743

Neighbor

gene id symbol gene type direction distance location
XLOC_015834 si:dkey-76d14.2 coding upstream 11047 45068366 ~ 45070442 (+)
XLOC_015833 prss56 coding upstream 23249 45049290 ~ 45058240 (+)
XLOC_015832 NA coding upstream 92196 44984483 ~ 44989293 (+)
XLOC_015831 alg3 coding upstream 100145 44972720 ~ 44981344 (+)
XLOC_015830 ece2a coding upstream 155199 44781185 ~ 44926290 (+)
XLOC_015836 CU929150.2 coding downstream 3220 45100963 ~ 45113236 (+)
XLOC_015837 CU929150.1 coding downstream 62112 45159855 ~ 45162467 (+)
XLOC_015838 ccl20a.3 coding downstream 93306 45191049 ~ 45193014 (+)
XLOC_015839 camsap2b coding downstream 202769 45300512 ~ 45326294 (+)
XLOC_015840 camsap2b coding downstream 246327 45344070 ~ 45353461 (+)
XLOC_015827 BX323035.2 non-coding upstream 516995 44564378 ~ 44564494 (+)
XLOC_015823 NA non-coding upstream 680821 44395314 ~ 44400668 (+)
XLOC_015821 BX005060.1 non-coding upstream 694796 44373221 ~ 44386693 (+)
XLOC_015843 NA non-coding downstream 334839 45432582 ~ 45433628 (+)
XLOC_015846 NA non-coding downstream 363390 45461133 ~ 45461974 (+)
XLOC_015847 NA non-coding downstream 370324 45468067 ~ 45468585 (+)
XLOC_015862 NA non-coding downstream 959063 46056806 ~ 46060001 (+)
XLOC_015863 NA non-coding downstream 1096584 46194327 ~ 46332513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000152_01985516_01996672 CHRNG coding CI01000152 null 1985516 ~ 1996686 (+)