XLOC_015838 (ccl20a.3)


Basic Information

Item Value
gene id XLOC_015838
gene name ccl20a.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45191049 ~ 45193014 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031476
gtacacATGTGCTGCTGTTTACGTATGCATGGAAAGCCCTGTTGGTTTTTTCCCCTGAGTCTGCATGTATATAAATCTCTTCTCACCTGCCCTAATTCTCATCTGCCTCTTGCTCTAAACATCTTAAACACACAGACAGAAGAACAGAGAGAAAATGAGTCGGATTTCAGCGTGTGTGATGGTGCTGACAATCGTGGCGCTGGGTTTACTGTGTACTGATGCTGCAGCTGTGTCGTGTTGCAGAAAGTATACCAAAGGAATGATCCCGATGTCATTAATCAAAGGATATTCCATTCAGACCATTACAAGAAGCTGCCACATTAATGCTGTCATATTCCACACAAACGGAGGCAAGAACATTTGCACAGACCCGTCCAAAGGCTGGGTGATGGAAAGCATCCGTAAGCTGAGGGAGAAGGTGCAAGCAATCAACAAAAAGAATTCCAAAGCTTAATCTGACAACTCCAGTGACTAAACAGATGTTATTACAAGAATCTATTTCTTTATGAAATTTGATATGTCTGCATATTTTTATATGCGTTTTAAAtctattatatgtattttatagtgtttattttttgtgtacttttttttaaaaccaatgcattaaattaatttttccATGTAAAGTG

Function

symbol description
ccl20a.3 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within chemotaxis and immune response. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in liver. Orthologous to human CCL20 (C-C motif chemokine ligand 20).

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0002548 monocyte chemotaxis biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0071346 cellular response to interferon-gamma biological_process
GO:0071347 cellular response to interleukin-1 biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0048247 lymphocyte chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0048020 CCR chemokine receptor binding molecular_function
GO:0008009 chemokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-193 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within chemotaxis and immune response. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in liver. Orthologous to human CCL20 (C-C motif chemokine ligand 20).

Ensembl:

ensembl_id ENSDARG00000101040

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031476 True 632 mRNA 0.38 4 45191049 45193014

Neighbor

gene id symbol gene type direction distance location
XLOC_015837 CU929150.1 coding upstream 28582 45159855 ~ 45162467 (+)
XLOC_015836 CU929150.2 coding upstream 77813 45100963 ~ 45113236 (+)
XLOC_015835 chrng coding upstream 93306 45081489 ~ 45097743 (+)
XLOC_015834 si:dkey-76d14.2 coding upstream 120607 45068366 ~ 45070442 (+)
XLOC_015833 prss56 coding upstream 132809 45049290 ~ 45058240 (+)
XLOC_015839 camsap2b coding downstream 107498 45300512 ~ 45326294 (+)
XLOC_015840 camsap2b coding downstream 151056 45344070 ~ 45353461 (+)
XLOC_015841 camsap2b coding downstream 161733 45354747 ~ 45376408 (+)
XLOC_015842 wdr47a coding downstream 189419 45382433 ~ 45419686 (+)
XLOC_015843 NA coding downstream 239568 45432582 ~ 45433628 (+)
XLOC_015832 NA non-coding upstream 201756 44984483 ~ 44989293 (+)
XLOC_015827 BX323035.2 non-coding upstream 626555 44564378 ~ 44564494 (+)
XLOC_015823 NA non-coding upstream 790381 44395314 ~ 44400668 (+)
XLOC_015821 BX005060.1 non-coding upstream 804356 44373221 ~ 44386693 (+)
XLOC_015846 NA non-coding downstream 268119 45461133 ~ 45461974 (+)
XLOC_015847 NA non-coding downstream 275053 45468067 ~ 45468585 (+)
XLOC_015862 NA non-coding downstream 863792 46056806 ~ 46060001 (+)
XLOC_015863 NA non-coding downstream 1001313 46194327 ~ 46332513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location