XLOC_015839 (camsap2b)


Basic Information

Item Value
gene id XLOC_015839
gene name camsap2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45300512 ~ 45326294 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031477
ATGGGAGATGCCGCAGAGATCAAGGAGAGCAGGAGGACCTTCATCGTGCCCTCCATCAAATCTATGGATCACTATGACTTCAGCAGGGCCAAGATATCCTGCAGTTTGACGTGGCTCATCGCCAAAGCCTTTGGATCTGACTGTGTGCCAGTGGAGTTGGAGGACCCTTTTTACCGGGACCAGTATGATCAGGAGCATGTGAAGCCTCCTGTTGTGTCTCTGCTTCTTTCTGCTGAGTTGTATTGTCGTGCGGGGAGTCTGATTCTCAGGAGCGACGCAGCTAAACCTCTTTTGGGTCATAACGCCGTCATCCAGGCCCTCGCTCAGAAAGCCCTGTATGTCACTGACCAGGAGAGACTCGTGACTGAGAGAGACCTCTGCAAGACCCCTATACAGATGAGCTCTCACCTGGCAATGATTGACACGTTAATGATGGCCTACACGGTTGAAATGGTCAGCGTAGAGCGAGTTCTAAGCTGCATCCAGAAATTCACTCCTTTCCTTCCTGAGGAAGACTTTCCTTATGATGCTGAAGAGGCTGTGACAACATGGATCAACAAG

Function

symbol description
camsap2b Predicted to enable microtubule minus-end binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in cytoplasm and microtubule. Predicted to colocalize with microtubule minus-end. Orthologous to human CAMSAP2 (calmodulin regulated spectrin associated protein family member 2).

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0007026 negative regulation of microtubule depolymerization biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0031175 neuron projection development biological_process
GO:0005874 microtubule cellular_component
GO:0036449 microtubule minus-end cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0030507 spectrin binding molecular_function
GO:0051011 microtubule minus-end binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-80 Predicted to enable microtubule minus-end binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in cytoplasm and microtubule. Predicted to colocalize with microtubule minus-end. Orthologous to human CAMSAP2 (calmodulin regulated spectrin associated protein family member 2).

Ensembl:

ensembl_id ENSDARG00000059965

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031477 True 561 mRNA 0.51 3 45300512 45326294

Neighbor

gene id symbol gene type direction distance location
XLOC_015838 ccl20a.3 coding upstream 107498 45191049 ~ 45193014 (+)
XLOC_015837 CU929150.1 coding upstream 138045 45159855 ~ 45162467 (+)
XLOC_015836 CU929150.2 coding upstream 187276 45100963 ~ 45113236 (+)
XLOC_015835 chrng coding upstream 202769 45081489 ~ 45097743 (+)
XLOC_015834 si:dkey-76d14.2 coding upstream 230070 45068366 ~ 45070442 (+)
XLOC_015840 camsap2b coding downstream 17776 45344070 ~ 45353461 (+)
XLOC_015841 camsap2b coding downstream 28453 45354747 ~ 45376408 (+)
XLOC_015842 wdr47a coding downstream 56139 45382433 ~ 45419686 (+)
XLOC_015843 NA coding downstream 106288 45432582 ~ 45433628 (+)
XLOC_015844 si:ch211-66k16.27 coding downstream 114713 45441007 ~ 45448291 (+)
XLOC_015832 NA non-coding upstream 311219 44984483 ~ 44989293 (+)
XLOC_015827 BX323035.2 non-coding upstream 736018 44564378 ~ 44564494 (+)
XLOC_015823 NA non-coding upstream 899844 44395314 ~ 44400668 (+)
XLOC_015821 BX005060.1 non-coding upstream 913819 44373221 ~ 44386693 (+)
XLOC_015846 NA non-coding downstream 134839 45461133 ~ 45461974 (+)
XLOC_015847 NA non-coding downstream 141773 45468067 ~ 45468585 (+)
XLOC_015862 NA non-coding downstream 730512 46056806 ~ 46060001 (+)
XLOC_015863 NA non-coding downstream 868033 46194327 ~ 46332513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000152_02136738_02176177 CAMSAP2B coding CI01000152 null 2136738 ~ 2176177 (+)