XLOC_015841 (camsap2b)


Basic Information

Item Value
gene id XLOC_015841
gene name camsap2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45354747 ~ 45376408 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031479
AAACATTTAATTGATATTTTGGTAAAGTTAATGCTTATTTCTTTCTCTTTCAGCAGTTATCAGGCGGTCGTCCTCCATGTCATATGTGGATGGATGTGTAGGGACATGGCCTAAAGAGAAACGGTGTGTACCTACTACTAAATTTCTATCACTTACTCTCTGTATATGCTTCagatatataaatgtttgtttttcctcatCTCAGGTCTTCAGCTCATGGAATATCGTTTGAGATTCCTCTTGATGATAGGACGAGTTCATCTTCAGGACGTGGACTGAGCCGGTCAGTAAGCACAGAAGGTTTGGGTTTTAAAGTTCACCATGCGGCCAGAGGTATGCGGAGAAACCTTTCATTCCAGCCGGTTAATGGAAATGCTCACAGCAAAATACACGAGGAGGATGGCGAAGACTCCAACAGACCGATCAGCAGGCATCGTCTGGGGACCTACACTGGGTATACAAACGGTGTATCGACAGGTAACCCAAGTCCTCCGTATGATGCTCAGCCCAGCACTCCTAGTATAGAAGAAGCCCTGAAGATCATCCATGACTCTGAGCGACCCCAGAGCAGCTTGCCGCCACCATCTGGGGACAGCGCCTTTTTCTTGCACAACCCATCTTCCTCTAACTCTGCCTCTGACCCCAATGAACCAGAGGACTCACTTAACAAGGCCAGAGCAGATGATGCTGACCTGAATTCCACGTCTACTGACATGGACACTGGAATCCACGTACGTACAGAGGACATTCAGGATGGACAGGATGAGGATTCGTCCTTGAAGGACTACTCAGACATGGACCAAGACTATGAGGCTCGTTCCTGTCCACTTCCAGACACGTCCGGCAGTCCGTGCCCAAGTCTTTTAGGAACAAGATCTTTGGCAACCAGCATGGCCTCCTCATTGGGCTCAGCGATACGCATGACCAGCTTTGCCGAACAGAAGTTTCGCAAACTAAACCACGGCGATGGCCGCAGCAGTGGCAGTGGTGGAAACACACCTGAAACTGCTGAACTGAACGCCACAACTCCAGGAGCATACGGGACAGTTCGGTCAGTTACTCCTGACACACATAGTCCTGCTCGAATCACATCCCCTCGTGATCCTTCACACCTTCTGGCATCCGAAATGGTGCAGTTAAAGATGAAGCTGGAGGAGAAACGCAGAGCCATCGAGGCCCAAAAAAAGAAAGTGGAAGCTGCTTTTACGCGTCACCGTCAGCGAATGGGCAGAACCGCCTTCCTCAATGTGGTCAGACGTAAAGGAGTCGTTTCGCCACTTGGGGGCAGCAGTGAAGGCCCGGATGGTCGAGAAAAGACAACCAATGATCCAGAACCCCAAAAGTCACCCTTAACTTTAAACGATTCCAATGCTAGGCTTGAGAGATGCCGACCAGATGGCGCTCCACCAAAATCTCCTCTGGAGGATGCAGGAGTAGAGGTGGACCTGACAGAGTACACTCGGTCAATCGAACGCTTGAACACGTCTCTGGGCTTCCTGCAGTCGGAGATGCAGCGGTTGGCACAACAGCAGGAGCGAATCATGCAGATGCGTGAACACCAGAGTTGGGTGATTTCACCACCAGATCCTTCACCGCGGAAACAATTTCGTGAACTGCGCAGTAGCAGTGTAGTTGGCCGAGGTTCGGTGGGATCTCTCTCTCCTATTTTATCATCCACCGGCTCTCCGCGCACTACACACCGCTCACCTTCTACAATCAAAAGGAAATCAGCATCTTTTCATGCAAGGACACCACGAACGCCAAGACCCAACGACCTTAAGGTCACTTCCTTCAGCCGCATGCTTAACACGCCGCAGTCAGTGGACAGCCTTCCTCGACTTAGACGTGTCTTACCAAGTCAGCCGCAAATCAGTTCATTCGCCTATTTGGGATCTGATGAAAGAGCTTTAAGTAAAGAGCAAAGCGATAAAGAAAAGCCATGTAAACCTGAATCCAAAGACACAGCTGCAGATCAGATGAGTGAAAAACAGAAAGAGGAAAAAAGAGGTACTGGAGAGAGTGACAAACTCACAAAAGCATTGACATCTGAGGTCACGGCCAGTGGGAACACAAATGAAGAAGAGTCTGAGGAGAGTAAGGATTTGATTGAGGTTCCTCTCTCGGTTCTGAAGCCTCTGGATGGACATGAGTTGGAGAGCAGCAGGGAAACAGAGACTGGACTAGGATCCAAACCAGATCAGAAGATGTGCTGTGGGTTCTTCTACAGGGATGACCTGCAGGGAGAGGAGGACATTGCACAGAAGAAAGCAGCTCTGATGGAGAAGAGGCTGCGGAGGGAGAAGGAGATGCAGATCAAGAAACAGCAACAGGAGGCTGAGatagaacagaagaaagaagctgcACGAATGAAAGTGGAAGAGGAACGTCAGAAGAAGGAGGACGAGAAGGCGAGACGGGAGTACATAAAACATGAGCATATGAGGAGGAAGCAGCTAAAACTGATGGAGGACATGGACAGTGTCATTAAGCCCAGTCCTTCTGGAGCCAAGCAGAAGAAGCCACGGCCCAAATCTATGCATAGAGACATCATGGAGTCTCCAAAACCTCCAGCACGGACAGCCACAGGGTCACGTCCTCGTGGATATTCTGTGTCCAGCATATCACTCGCCTCCCTGAACTTAGCAGACAATGAGagcatccaatcagataagagaacATCCAGGTGA
>TCONS_00031480
CAGTTATCAGGCGGTCGTCCTCCATGTCATATGTGGATGGATGTGTAGGGACATGGCCTAAAGAGAAACGGTCTTCAGCTCATGGAATATCGTTTGAGATTCCTCTTGATGATAGGACGAGTTCATCTTCAGGACGTGGACTGAGCCGGTCAGTAAGCACAGAAGGTTTGGGTTTTAAAGTTCACCATGCGGCCAGAGGTATGCGGAGAAACCTTTCATTCCAGCCGGTTAATGGAAATGCTCACAGCAAAATACACGAGGAGGATGGCGAAGACTCCAA
>TCONS_00031481
atgtttgtttttcctcatCTCAGGTCTTCAGCTCATGGAATATCGTTTGAGATTCCTCTTGATGATAGGACGAGTTCATCTTCAGGACGTGGACTGAGCCGGTCAGTAAGCACAGAAGGTTTGGGTTTTAAAGTTCACCATGCGGCCAGAGGTATGCGGAGAAACCTTTCATTCCAGCCGGTTAATGGAAATGCTCACAGCAAAATACACGAGGAGGATGGCGAAGACTCCAACAGACCGATCAGCAGGCATCGTCTGGGGACCTACACTGGGTATACAAACGGTGTATCGACAGGTAACCCAAGTCCTCCGTATGATGCTCAGCCCAGCACTCCTAGTATAGAAGAAGCCCTGAAGATCATCCATGACTCTGAGCGACCCCAGAGCAGCTTGCCGCCACCATCTGGGGACAGCGCCTTTTTCTTGCACAACCCATCTTCCTCTAACTCTGCCTCTGACCCCAATGAACCAGAGGACTCACTTAACAAGGCCAGAGCAGATGATGCTGACCTGAATTCCACGTCTACTGACATGGACACTGGAATCCACGTACGTACAGAGGACATTCAGGATGGACAGGATGAGGATTCGTCCTTGAAGGACTACTCAGACATGGACCAAGACTATGAGGCTCGTTCCTGTCCACTTCCAGACACGTCCGGCAGTCCGTGCCCAAGTCTTTTAGGAACAAGATCTTTGGCAACCAGCATGGCCTCCTCATTGGGCTCAGCGATACGCATGACCAGCTTTGCCGAACAGAAGTTTCGCAAACTAAACCACGGCGATGGCCGCAGCAGTGGCAGTGGTGGAAACACACCTGAAACTGCTGAACTGAACGCCACAACTCCAGGAGCATACGGGACAGTTCGGTCAGTTACTCCTGACACACATAGTCCTGCTCGAATCACATCCCCTCGTGATCCTTCACACCTTCTGGCATCCGAAATGGTGCAGTTAAAGATGAAGCTGGAGGAGAAACGCAGAGCCATCGAGGCCCAAAAAAAGAAAGTGGAAGCTGCTTTTACGCGTCACCGTCAGCGAATGGGCAGAACCGCCTTCCTCAATGTGGTCAGACGTAAAGGAGTCGTTTCGCCACTTGGGGGCAGCAGTGAAGGCCCGGATGGTCGAGAAAAGACAACCAATGATCCAGAACCCCAAAAGTCACCCTTAACTTTAAACGATTCCAATGCTAGGCTTGAGAGATGCCGACCAGATGGCGCTCCACCAAAATCTCCTCTGGAGGATGCAGGAGTAGAGGTGGACCTGACAGAGTACACTCGGTCAATCGAACGCTTGAACACGTCTCTGGGCTTCCTGCAGTCGGAGATGCAGCGGTTGGCACAACAGCAGGAGCGAATCATGCAGATGCGTGAACACCAGAGTTGGGTGATTTCACCACCAGATCCTTCACCGCGGAAACAATTTCGTGAACTGCGCAGTAGCAGTGTAGTTGGCCGAGGTTCGGTGGGATCTCTCTCTCCTATTTTATCATCCACCGGCTCTCCGCGCACTACACACCGCTCACCTTCTACAATCAAAAGGAAATCAGCATCTTTTCATGCAAGGACACCACGAACGCCAAGACCCAACGACCTTAAGGTCACTTCCTTCAGCCGCATGCTTAACACGCCGCAGTCAGTGGACAGCCTTCCTCGACTTAGACGTGTCTTACCAAGTCAGCCGCAAATCAGTTCATTCGCCTATTTGGGATCTGATGAAAGAGCTTTAAGTAAAGAGCAAAGCGATAAAGAAAAGCCATGTAAACCTGAATCCAAAGACACAGCTGCAGATCAGATGAGTGAAAAACAGAAAGAGGAAAAAAGAGGTACTGGAGAGAGTGACAAACTCACAAAAGCATTGACATCTGAGGTCACGGCCAGTGGGAACACAAATGAAGAAGAGTCTGAGGAGAGTAAGGATTTGATTGAGGTTCCTCTCTCGGTTCTGAAGCCTCTGGATGGACATGAGTTGGAGAGCAGCAGGGAAACAGAGACTGGACTAGGATCCAAACCAGATCAGAAGATGTGCTGTGGGTTCTTCTACAGGGATGACCTGCAGGGAGAGGAGGACATTGCACAGAAGAAAGCAGCTCTGATGGAGAAGAGGCTGCGGAGGGAGAAGGAGATGCAGATCAAGAAACAGCAACAGGAGGCTGAGatagaacagaagaaagaagctgcACGAATGAAAGTGGAAGAGGAACGTCAGAAGAAGGAGGACGAGAAGGCGAGACGGGAGTACATAAAACATGAGCATATGAGGAGGAAGCAGCTAAAACTGATGGAGGACATGGACAGTGTCATTAAGCCCAGTCCTTCTGGAGCCAAGCAGAAGAAGCCACGGCCCAAATCTATGCATAGAGACATCATGGAGTCTCCAAAACCTCCAGCACGGACAGCCACAGGTACAACATCAATACAagctttcagatgagatgttaaaccgaggtcttagATCTCTGAGGTCATTAAAAATATCAAGGCATTACTAATAAAGGAGTAGAGGTGCAACCCCGGTGTCCTGGGCAAAATCTCTCTCttagcccttacccatcatggcctcccaatcattcctATCCAATTAGCTCTATCACCATCTCTCCACTCCATCTATTGCTGGTTTGTTGTGAGCGCACTGGtgttgttgtcctgtggctgccgtcacatcatccaagtggatgctgcacactagtggtggtgtggagagaccccccctcatgattgtgaagcactttagtTGTATGGccttacacaataaatgtgctttataaatacacaGTATAGTACATTATAAGCTGCTAGTGTGCATGACagtacccagatagcaaaatacactcgggccagattctcgcctgccggagacttacccctcggcccgACTCCGGTTGCCGCACTCAGGCCAGAGCAAGAGCcagaatcggcccgagagtaatgtgtgctgcggcccggagctggcgcgactcagtctttatataccttgatataaaaccttttggaaacaaattggtacttgatacatggtatttgAACTGCCCATGATTTAATACACTCGCTTTGCTTGCCATAATTGgagtcaccacaggagggcgctctTGCCTAATAGGATTTAAGTGAGACAAAGCAGAGTAAGAGCAATTCACATTTGTTCACGAGCTAACAGGTACAGCTTGGAAGAATGCCTTGAGCTTTTAGTGTCCTTTCGGCAAGCAGAGCGAGTTTTACTGTAGCAGCCATTCAGCTTTCAATAAATAGGCAGAGAGTTTTTGACAGGTGCATTTAAAATGGTTTACTTGGATGCAATAAAGTTCATCACATAAATCGTCATTTTCTCAGTTCTTTGTTGTATACATCGAAGCATCAAAAGACCAATGGCACCAAAAGCACCGTAAAActagagaaaacaaacaaacaacatagaaaaataaacaacaaacatttacaaaacatctaacattttccaaataaatcaaacaataaacaaaacatacctCGCTCTGCTTGCCGAAGGGACACTAAAAGCTCAAGGCATTCTTCCGAGCTGTACCTGTTAGCTCCTGAACAAACGTGAATTGCTCTTACTCTGCTTTGTCTCACTTAAATCCTATTAGTCTagagcgccctcctgtggtgactcCAATTATGGCAAGCAAGGCGAGTGCATTAAATCATGGGCAGTTAcagtattacaaccatttgaatttatataacagcaaacgcaggctataatgtaaacacaaagtgtaggcgctgcgtttaacctttgaataaaatgcaCACAGCATACATATCCTATAacgaaaataatcaaacaaaggacaaaataaatgaatgataaacgtttattgattgcaagaaaacaatagtactaaaattaaatgaataattttgcaGTGCACAagaacatcaatataaaaacaacaataaaactacACAAGAAAGACACACAGGaagatttaaagaaaaaatctgaatttgCACACATAcaaagaagtttttaaaacaaccccgttttcccaatagacttgaattaaaatattgttcaagacacatcttaaaacagctaaattttatagaaacctgaatatagaaaccaatttaagatatagcaagaaacatcttacaaataccaatgacaatccgtaaaatgtacaagtcaaaattgtaaaaagaactgccaaattctgaagaaacatcttttaataaaacattaaaatactaataataatatccaaaaaatatataaatataaaattgcagaagtataaagacaaacttatttttaaatgaacttgATCAGAATAAATTCCACATCACAAACGCATGTGTGCGAGCGAGCTGTAGGCGCACTCGGAGCCGGATGTGCCGGAGGGCAGCTGAGCTCGGCCCaattactacctgctatctgggtaTTGTCGATGACATTTTAAACCTGCTAAAGACAATATAGAATTTGTgtagttttaaacaatttttaccaacagctgaagtcaaaattatgagcccccctaaattattagcccccctgtttattttttccctaatttctgttaaacggagagattcaaaactcatctataataactgatttattttatctgtgccatgatgacagtagataatatttgactagatattttttaagacacttctatacagcttaaagtgacatttaaaagcttaactaggttaattaggttaggcaggttagagtaattaagcaagctattgtataacgatggtttgttctgtagacaatcgaaaataaaattagcttaaatgggctaatgatattgttcttaaaatgtttttttttttttaactgattttattctagcctaaataagactttttccagaagaaaaaacattatcagacataatttGAAAATGCCTATActttgttaaacatcgtttgggaaatatttaaaagaagaaaaaaacaaaggggggctaataattctgacttcaactgtattttaatattttaaatcataatcataattattttaaataatagtgtAATGTTCTATTACATTAAATACTATTATacaattttaatgcattaaaacatgtAAATTGCATTTTAGACATGGGCTCA
>TCONS_00031482
GATGACCTGCAGGGAGAGGAGGACATTGCACAGAAGAAAGCAGCTCTGATGGAGAAGAGGCTGCGGAGGGAGAAGGAGATGCAGATCAAGAAACAGCAACAGGAGGCTGAGatagaacagaagaaagaagctgcACGAATGAAAGTGGAAGAGGAACGTCAGAAGAAGGAGGACGAGAAGGCGAGACGGGAGTACATAAAACATGAGCATATGAGGAGGAAGCAGCTAAAACTGATGGAGGACATGGACAGTGTCATTAAGCCCAGTCCTTCTGGAGCCAAGCAGAAGAAGCCACGGCCCAAATCTATGCATAGAGACATCATGGAGTCTCCAAAACCTCCAGCACGGACAGCCACAGGGTCACGTCCTCGTGGATATTCTGTGTCCAGCATATCACTCGCCTCCCTGAACTTAGCAGACAATGAGagcatccaatcagataagagaacATCCAGGCCGGAGTCTGCAGAGGGCTTTCTGTCACCCTGTCCTTCTGTTAGTGGAAACGGGGAAAACTGGGAGCTGGAATCAACATCATCCGCAGCATCTAACACAGAATACACAGGGCCAAAGTTGTACAAGGAGCCCAGTGcgaaatcaaataaatacattatccAGAACGCACTGGCGCACTGCTGCCTTGCGGGCCGCGTCAACGAGGGACAGAAGAACAAGATCCTGGAGGAAATGGAGAAAACCGAAGCCAACAACTTCCTGATTTTGTTTCGAGACACTGGCTGCCAGTTTCGCTCTCTGTACACCTACTATCCTGAAGCGGAGGAGATGAACAAGCTGGCTGGCATCGGGCCCAAGACCATCACACCCAAAATGATCGAAAACCTCTACAAATACAGCTCGGATAAGAAGCAGTTCAGCAAAATCCCCGCCAAGACCATGTCGGCGAGTGTGGACGCCATCACCATCTATAGCCACCTCTGGCAGAACAAGAAACAAAACACAGCCAAAAAACTCCTC
>TCONS_00031483
ttcattgtcAGGCCGGAGTCTGCAGAGGGCTTTCTGTCACCCTGTCCTTCTGTTAGTGGAAACGGGGAAAACTGGGAGCTGGAATCAACATCATCCGCAGCATCTAACACAGAATACACAGGGCCAAAGTTGTACAAGGAGCCCAGTGcgaaatcaaataaatacattatccAGAACGCACTGGCGCACTGCTGCCTTGCGGGCCGCGTCAACGAGGGACAGAAGAACAAGATCCTGGAGGAAATGGAGAAAACCGAAGCCAACAACTTCCTGATTTTGTTTCGAGACACTGGCTGCCAGTTTCGCTCTCTGTACACCTACTATCCTGAAGCGGAGGAGATGAACAAGCTGGCTGGCATCGGGCCCAAGACCATCACACCCAAAATGATCGAAAACCTCTACAAATACAGCTCGGATAAGAAGCAGTTCAGCAAAATCCCCGCCAAGACCATGTCGGCGAGTGTGGACGCCATCACCATCTATAGCCACCTCTGGCAGAACAAGAAACAAAACACAGCCAAAAAACTCCTCAAATAA

Function

symbol description
camsap2b Predicted to enable microtubule minus-end binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in cytoplasm and microtubule. Predicted to colocalize with microtubule minus-end. Orthologous to human CAMSAP2 (calmodulin regulated spectrin associated protein family member 2).

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0007026 negative regulation of microtubule depolymerization biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0031175 neuron projection development biological_process
GO:0005874 microtubule cellular_component
GO:0036449 microtubule minus-end cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0030507 spectrin binding molecular_function
GO:0051011 microtubule minus-end binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-80 Predicted to enable microtubule minus-end binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in cytoplasm and microtubule. Predicted to colocalize with microtubule minus-end. Orthologous to human CAMSAP2 (calmodulin regulated spectrin associated protein family member 2).

Ensembl:

ensembl_id ENSDARG00000059965

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031479 False 2687 mRNA 0.49 5 45354747 45370242
TCONS_00031480 False 280 mRNA 0.48 2 45354800 45355161
TCONS_00031481 False 5096 mRNA 0.43 4 45354929 45369528
TCONS_00031482 False 975 mRNA 0.50 6 45362016 45376402
TCONS_00031483 True 537 mRNA 0.50 3 45374163 45376408

Neighbor

gene id symbol gene type direction distance location
XLOC_015840 camsap2b coding upstream 1286 45344070 ~ 45353461 (+)
XLOC_015839 camsap2b coding upstream 28453 45300512 ~ 45326294 (+)
XLOC_015838 ccl20a.3 coding upstream 161733 45191049 ~ 45193014 (+)
XLOC_015837 CU929150.1 coding upstream 192280 45159855 ~ 45162467 (+)
XLOC_015836 CU929150.2 coding upstream 241511 45100963 ~ 45113236 (+)
XLOC_015842 wdr47a coding downstream 6025 45382433 ~ 45419686 (+)
XLOC_015843 NA coding downstream 56174 45432582 ~ 45433628 (+)
XLOC_015844 si:ch211-66k16.27 coding downstream 64599 45441007 ~ 45448291 (+)
XLOC_015845 si:ch211-66k16.2 coding downstream 78007 45454415 ~ 45456892 (+)
XLOC_015846 NA coding downstream 84725 45461133 ~ 45461974 (+)
XLOC_015832 NA non-coding upstream 365454 44984483 ~ 44989293 (+)
XLOC_015827 BX323035.2 non-coding upstream 790253 44564378 ~ 44564494 (+)
XLOC_015823 NA non-coding upstream 954079 44395314 ~ 44400668 (+)
XLOC_015821 BX005060.1 non-coding upstream 968054 44373221 ~ 44386693 (+)
XLOC_015847 NA non-coding downstream 91659 45468067 ~ 45468585 (+)
XLOC_015862 NA non-coding downstream 680398 46056806 ~ 46060001 (+)
XLOC_015863 NA non-coding downstream 817919 46194327 ~ 46332513 (+)

Expression


Co-expression Network