XLOC_015842 (wdr47a)


Basic Information

Item Value
gene id XLOC_015842
gene name wdr47a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45382433 ~ 45419686 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031484
CACGCGGATTGGTGGAGCGCGCAGAGGAAGCTTGTGTGCTTGACAACCAGCAAGCGGCAGGCACAACAAGAGCCTCTCGCCCCGAAACTCGGAGGAATAAACCCTGCAGACAGCGCGTGTCGACACACCCTCGGCGGACACAAAGAGGATTCCTGCACTTCGCGTTTATGTAGTGATTACCAGcttGCCACCATGACGGCTGAGGAGATCATAAACGTGAAGGAGGTGGAGATCATCAAAGTGATGTTGGACTTTCTAAACTCACGCAAGCTGCACATTAGCATGCTAGCATTGGAGAAGGAGAGCGGTGTCATCAACGGCCTCTACTCAGACGATATGCTCTTCCTCAGGCAGCTCATTCTGGATGGACAGTGGGATGAAGTGTTGCAGTTTATTCAGCCTCTCGAGTGTCTGGATAAATTTGATAGGAAGAGGTTCCGTTacattgttttaaagcagaagtttcTGGAAGCTTTGTGTGTGAACAATGCCATGTCTGCTGAAGATGAGCCACAACATCTGGAGCTGACCATGCAGGAGGCGGTCAAGTGTCTCCACGCTCTGGAAGAGTTCTGTCCATCTAAAGATGACTACAGCAAGCTCTGCCTTCTCCTGACTCTTCCCCGTCTCACCAACCATGCCGAGTTCAAGGACTGGAACCCAAGTACAGCTCGTGTTCAGTGTTTCGAGGAGTCCTGCGGTATGGTGGCGGAGTTTATCCCCGCCGACCGAAAGCTGAGTGAAGCCGGGTTCCGCGCCAGCTCCAATCGCCTCTTCCAGCTCCTGATTAAAGGTGTATTATATGAATGCTGCGTGGAGTTCTGCCAGAGCAAAGCTACTGGAGAGGAGATCACAGAGAGTGAGGTTCTCCTGGGTATCGACATGCTTTGTGGAAACGGCTGCGATGATCTCGACCTGAGTTTGCTTTCTTGGCTCCAGAACCTGTCGCCAAGTGTCTTCTCATGCGCTTTCGAGCAGAAGATGCTCAATATCCATGTGGATCGGCTTGTCAAACCAGCCAAGGCTGCCTACGCTGACCTGCTTACTCCGCTCATCAGCAAGCTCTCCCCGTACCCCGCTTCTCCTCTCCGCCGGCCACAGTCTGCAGATACATACATGTCTCGCTCTTTGAACCCAGCGCTGGATGGCTTGTCCTACGGCTTGTCGCAGGAGAAGAGAGGAGTGACGACTGATGGAGGGAAAACGTCACCCATGTCGCACTCCTTCGCTAATTTTCAACACATGAACCGCAGTGTGATGATGGAGAATTCAGGGTGTCACAGCATCTTCGAGGAGTCACCAGAAAGCTCCAGAACTGAAACTCCATCTGATAAAATGATGAGTTCACCCGGTCCTCAAAACTCTCGCCCGGCCTCTGCCCCAGGTCAAGATGCCCCAACACCTGGTTCTGAAGAAAAGAATGAGTTGCGGGACTCCACCGACCAGTTTCAGGAATATTACCGCCAGCGGTTACGTGTACAGCAGCATCTGGAACAGAAGCAGCAGCAGAGGGAGCTCTATCAGCAGATGCTGAGAGAAGGCGGAGTCCAGCAGCATGAGGCCCCGCCCACTGCCAAGCACAATCTTACAGAAGCCTTCCTTACCAGGTCTATTCAGCGTCTGGAGGAGCTGAACGTGGGAATGGATGATTTAGGAGAAGAGGTGCAGGCTCTCTCTCAGCAGTGCAAAGAAGGAACTAACAGCAACGGTGAAGTTGGAGACGCTTCAGCTACACCACAGACACAGGATGGAGGTGGAGGAGCCAGCAGTGTGATGACCAGCACTCCTCAGAGGTCAGCGAGTCAATCCGGCTTTCCTCCATCCAGCCAGTCTCCTGTACTGACCAAGAGTGCCCAGAAAGACAAAACTGGACAGAACGACAGTTTGACCCGCTCTAAAGGCCCAGAGaAAGAGAAGACTAAAGCCAAGTTTGTGATGGTCAACACTCTGGAGGACACTCAGGCAGTCCGCGCCGTGGCTTTTCACCCTACAGGAGCGTTATATGCTGTCGGCTCCAACTCTAAAACCCTGCGTGTGTGTGCTTATCCAGACACACTGGACACCAGTGGTACGGGGACGAACAAACCTCCTGTAATCCGCTTTAAGAGGAACAAGCATCACAAAGGCTCCATATATTGTGTGGCCTGGAGCCCCTGTGGACAATTACTGGCCACCGGTTCCAATGATAAATATGTCAAAGTGCTGCCCTTCAACCCTGAGACCTGCAATGCTACagGCCCTGATCTGGAGTTCAGTATGCATGACGGCACTATTAGAGATCTGGCGTTTATGGAGGGTCCCGAGTGTGGAGGAGCCATTCTGATCAGTGCAGGAGCAGGAGACTGTAACATCTACACCACCGACTGCCAGAGAGGACAAGGCCTGCACGCGCTGAGCGGACACACAGGTCATATTCTGTCTCTGTACACGTGGGGGGGCTGGATGATCGCGTCTGGTTCTCAGGATAAGACGGTGCGTTTTTGGGACCTGCGGGTTCCCAGCTGTGTGAGAGTGGTGGGAACGGCCTTTCAAGGCTCAGGCAGTCCTGTGGCGTCAGTAGCGGTGGATCCAAGTGGGCGTCTGTTGGCGACGGGACAGGAGGACAGCTCCTGTATGCTCTATGACATTAGAGGTGGACGAATGGTTCAGACGTATAAGCCGCACTCCAGTGACGTCCGGTCAGTGCGCTTCTCACCCGGAGCTCATTACCTGCTCACTGGATCCTACGACAACAAGGTCATCGTCACTGACCTGCAAGGTGACCTGACGAAGCAGCTGCCGTTGACTGTAGTCGGAGAGCATGGAGATAAAGTGATCCAGTGTCGATGGCACTCACACCATCTCTCCTTCTTGTCCTCCTCCGCTGACCGTACCGTCACACTCTGGACACAGGCCACGTAGAACACCGCTGACCACTACACATAGACAACACATGTACAAACACATCTGCTTCTGTCTGATACCAGTCTGTATTCATTTCATGTTCCTGAAAGGTGAGTGTCACAGTGAATGGCTGATTTCAACGCAAAcccttttttatgcacatataatGGACTGCCAGTGTGTCTGATGGCCTTGAGTCATGCTTTCCACTATAAATGTGCTTTAGGTTCATAATCCT

Function

symbol description
wdr47a Orthologous to human WDR47 (WD repeat domain 47).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070216-3 Orthologous to human WDR47 (WD repeat domain 47).

Ensembl:

ensembl_id ENSDARG00000078136

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031484 True 3121 mRNA 0.53 15 45382433 45419686

Neighbor

gene id symbol gene type direction distance location
XLOC_015841 camsap2b coding upstream 6025 45354747 ~ 45376408 (+)
XLOC_015840 camsap2b coding upstream 28972 45344070 ~ 45353461 (+)
XLOC_015839 camsap2b coding upstream 56139 45300512 ~ 45326294 (+)
XLOC_015838 ccl20a.3 coding upstream 189419 45191049 ~ 45193014 (+)
XLOC_015837 CU929150.1 coding upstream 219966 45159855 ~ 45162467 (+)
XLOC_015843 NA coding downstream 12896 45432582 ~ 45433628 (+)
XLOC_015844 si:ch211-66k16.27 coding downstream 21321 45441007 ~ 45448291 (+)
XLOC_015845 si:ch211-66k16.2 coding downstream 34729 45454415 ~ 45456892 (+)
XLOC_015846 NA coding downstream 41447 45461133 ~ 45461974 (+)
XLOC_015847 NA coding downstream 48381 45468067 ~ 45468585 (+)
XLOC_015832 NA non-coding upstream 393140 44984483 ~ 44989293 (+)
XLOC_015827 BX323035.2 non-coding upstream 817939 44564378 ~ 44564494 (+)
XLOC_015823 NA non-coding upstream 981765 44395314 ~ 44400668 (+)
XLOC_015821 BX005060.1 non-coding upstream 995740 44373221 ~ 44386693 (+)
XLOC_015862 NA non-coding downstream 637120 46056806 ~ 46060001 (+)
XLOC_015863 NA non-coding downstream 774641 46194327 ~ 46332513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000152_02237042_02257933 WDR47A, WDR47 coding CI01000152 null 2237042 ~ 2258221 (+)