XLOC_015843


Basic Information

Item Value
gene id XLOC_015843
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45432582 ~ 45433628 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033657
atagaggtaaagttggttttatattcgcacattccgaCCTCTGCGTTCAATAAGTTTGTTAATCAGCAAGTAAGGAATACAAATTCAATTATTTACCGTTGTAGTCGATTATGAGCAAAATGTACACCACACTTTTCTGTCAAACTCTGCGTTTTAAAGGAGTAGAAAAACACGCTTACCTCTATGAAGGAGGTGACGTCATCGCTTTTTACAAACTATCAGTTTGTAAAATCAAGCTGCTAACGTTCACTGTCTATAATTGTACGCAAGCAAAATATGGCCAGATTGAGACTTGTGAACTTCACCACTGGCTCCCTCCTTTAAAATGTTACTCTGCTGAAgtacatgtaaataaaaaactattttcaagACAGCAAATAACAGTGTCATGAAATGAGTGCTGCTCATGTGGACGAAAAGAGGTTAAAATGAAAATCTATGCATTTGGGGATTTACAATGCTATTATTTActttggaatgtttttttttatacttgcATGTACTTGCACAATATTTGTATTCATAATTGCCACATATTACATAGTAATGTAATAAGTTGTACTTTAATAACATATTAAGTGAGATTCTTGCCAATGTTTGTTTCATGTCCCATGTGTCAATTTAGAGCTGCAATAGGAAGAGCAACAGActttttgtgatttgtgtttgtaATCAATGAAATTGCATGATAAAAGGAGGAAATAGGAGATATGATGCATTTATTCTTAAATTATCATTGTGTATTAagagtgctttttaaataaact

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033657 True 767 lncRNA 0.33 2 45432582 45433628

Neighbor

gene id symbol gene type direction distance location
XLOC_015842 wdr47a coding upstream 12896 45382433 ~ 45419686 (+)
XLOC_015841 camsap2b coding upstream 56174 45354747 ~ 45376408 (+)
XLOC_015840 camsap2b coding upstream 79121 45344070 ~ 45353461 (+)
XLOC_015839 camsap2b coding upstream 106288 45300512 ~ 45326294 (+)
XLOC_015838 ccl20a.3 coding upstream 239568 45191049 ~ 45193014 (+)
XLOC_015844 si:ch211-66k16.27 coding downstream 7379 45441007 ~ 45448291 (+)
XLOC_015845 si:ch211-66k16.2 coding downstream 20787 45454415 ~ 45456892 (+)
XLOC_015846 NA coding downstream 27505 45461133 ~ 45461974 (+)
XLOC_015847 NA coding downstream 34439 45468067 ~ 45468585 (+)
XLOC_015848 si:ch211-66k16.28 coding downstream 46213 45479841 ~ 45550327 (+)
XLOC_015832 NA non-coding upstream 443289 44984483 ~ 44989293 (+)
XLOC_015827 BX323035.2 non-coding upstream 868088 44564378 ~ 44564494 (+)
XLOC_015823 NA non-coding upstream 1031914 44395314 ~ 44400668 (+)
XLOC_015821 BX005060.1 non-coding upstream 1045889 44373221 ~ 44386693 (+)
XLOC_015862 NA non-coding downstream 623178 46056806 ~ 46060001 (+)
XLOC_015863 NA non-coding downstream 760699 46194327 ~ 46332513 (+)
XLOC_015864 NA non-coding downstream 847074 46280702 ~ 46317783 (+)
XLOC_015822 NA non-coding upstream 1047344 44383172 ~ 44385238 (+)

Expression


Co-expression Network