XLOC_015844 (si:ch211-66k16.27)


Basic Information

Item Value
gene id XLOC_015844
gene name si:ch211-66k16.27
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45441007 ~ 45448291 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031485
GCAGTCTGTCGGAGGACAGAGCAGAGCGAGCACTTAAATAAATGAGACCGCTGAACCTGCAGACAGACTCCAGCTCTTTACtttacacaacacaacacaacacaacgcaGAGGGGTAGTCGAGCCGTTAAGACCAGCCCCGGCTACATGATCATTATTCAACAGAATGAGCAACTACGAGGCCGAATTTGTGGATCGGAACCGCGCCGTCCTTATTCAAAGGGTTATAGCAGTGATGCCAATAGCAGATGAGCTGAAAAACAAGATTCACGATGAAACCTACGCAGAGATTAAAGCAGAAAAAACCAGCCAGGGTAAAATGAGAAAGCTCTATGATGCGCTAAACGCTGGCGGAGACCGAGTGAAAACAGACTTTTATTATGCTTTGAG
>TCONS_00031486
TCTGTCGGAGGACAGAGCAGAGCGAGCAGTAGCAGGCGTAAGAGGAGTTTTAAGAGAAGACTAACTGCATGTTCTCTGTTTGTGCAGCACTTAAATAAATGAGACCGCTGAACCTGCAGACAGACTCCAGCTCTTTACtttacacaacacaacacaacacaacgcaGAGGGGTAGTCGAGCCGTTAAGACCAGCCCCGGCTACATGATCATTATTCAACAGAATGAGCAACTACGAGGCCGAATTTGTGGATCGGAACCGCGCCGTCCTTATTCAAAGGGTTATAGCAGTGATGCCAATAGCAGATGAGCTGAAAAACAAGATTCACGATGAAACCTACGCAGAGATTAAAGCAGAAAAAACCAGCCAGGGTAAAATGAGAAAGCTCTATGATGCGCTAAACGCTGGCGGAGACCGAGTGAAAACAGACTTTTATTATGCTTTGAGAAATAATGAGCCATACCTCTTCAGAGACCTGGGTGGTGTGACAGCTAATCATGAAGCTGATGTGAACATGGAGAGAGGAATACTACAGTAAACTGAACACTCCTTGCACCGAAGACACAGAAGAAGACCCCTGCAATTGGAAACGAATGTGACCTGAAAAGATGCAGCCACCTTGAGATTAAGGAAAGTTTCATAAATGCAGTTACTAAGGGAACAGTTTACCCAGGCATTTGACCAAAGATATGACTCTTTTGTAAATGAAACAAAAGGAGAAATGGATCTGTTTAATATGAAGGATGAATGTATTGATTGTTGAAGGTTGAATCTTTCAGATCTTTTGATCTTTGTGTTTTAAATAAGAAAAGTCATATTGGTGTTCATTTTgtaagtaaacatttttaattcatcAAAAGTACATGTTATGaatcaatttttacattttttaagtatttttatattatattactatttttttaagttttaaaacacAATCAAGTATCAAATAAgtcttattattaattaaaatgcttaaaaagtaGCTCTTTTTTATACTATAGCTAACTAGTATTGAACTTGTATGATGTATACCacctgttttttatattttaaatgtaaaacctcATTGACTTGCAACATGATGTcacaacatttataaaataaaatgaccaaTACT

Function

symbol description
si:ch211-66k16.27 Predicted to act upstream of or within inflammatory response; innate immune response; and regulation of apoptotic process.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042981 regulation of apoptotic process biological_process
GO:0006954 inflammatory response biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-120709-9 Predicted to act upstream of or within inflammatory response; innate immune response; and regulation of apoptotic process.

Ensembl:

ensembl_id ENSDARG00000091280

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031485 False 389 mRNA 0.47 3 45441007 45442182
TCONS_00031486 True 1119 mRNA 0.37 4 45441563 45448291

Neighbor

gene id symbol gene type direction distance location
XLOC_015843 NA coding upstream 7379 45432582 ~ 45433628 (+)
XLOC_015842 wdr47a coding upstream 21321 45382433 ~ 45419686 (+)
XLOC_015841 camsap2b coding upstream 64599 45354747 ~ 45376408 (+)
XLOC_015840 camsap2b coding upstream 87546 45344070 ~ 45353461 (+)
XLOC_015839 camsap2b coding upstream 114713 45300512 ~ 45326294 (+)
XLOC_015845 si:ch211-66k16.2 coding downstream 6124 45454415 ~ 45456892 (+)
XLOC_015846 NA coding downstream 12842 45461133 ~ 45461974 (+)
XLOC_015847 NA coding downstream 19776 45468067 ~ 45468585 (+)
XLOC_015848 si:ch211-66k16.28 coding downstream 31550 45479841 ~ 45550327 (+)
XLOC_015849 aknad1 coding downstream 63168 45511459 ~ 45515448 (+)
XLOC_015832 NA non-coding upstream 451714 44984483 ~ 44989293 (+)
XLOC_015827 BX323035.2 non-coding upstream 876513 44564378 ~ 44564494 (+)
XLOC_015823 NA non-coding upstream 1040339 44395314 ~ 44400668 (+)
XLOC_015821 BX005060.1 non-coding upstream 1054314 44373221 ~ 44386693 (+)
XLOC_015862 NA non-coding downstream 608515 46056806 ~ 46060001 (+)
XLOC_015863 NA non-coding downstream 746036 46194327 ~ 46332513 (+)
XLOC_015864 NA non-coding downstream 832411 46280702 ~ 46317783 (+)

Expression


Co-expression Network