XLOC_015848 (si:ch211-66k16.28)


Basic Information

Item Value
gene id XLOC_015848
gene name si:ch211-66k16.28
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45479841 ~ 45550327 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031488
taataagtttttttttgtttcttttagagAATGTAGAAAGGTTTTCATTGGATTGTTTTATTACCTCTGAAAGTGTTAAACTTTCATCTGAAGCAGTGGAGCTGGCACCTTGTTATACTGAACCAGTGATCATTCAGAGGAGCAAAGAGCAAACTGAGAAATACTGTCAAGAATATGTGAGGTCTCCACACACATCATCTCATCTGTTATCAAATGACAAGACTCAGAGCATCAGAATCGGCCAGCTCTTCAGTCCTGACAGTGATGGAAACACACCGAAAACTGTGATTCTCTGTGGAGATTCTGGAAGAGGAAAATCCTTCGTATTAGAGAAGATCATCTTGGACTGGGTTCATTTAGAACATCATTTTGAAAACTTTGATGCTGTTTTTCTTCTGAAATATGAAGAGCTGAAGTGTCTTTCTGAGGAGATGAGCCTGACTGAGCTCTTGAGCAGGAGCTGCAGTTTAACCTCAGATCAGATCTCACAGATATTACAATTAACCCCAGAGAAAGTTCTGTTCCTCATTGATGGAATTGATGATTTTTCATTTAATGCACACATTCAAATCTCATCACCTACTGATCCATCCCAGAAAGCCCCAGTTATAAGCATTATTCACTGCCTGATGAGGGATCTCCTGCTAGTTGAGTCTTCTGTGATCGTCACCACTAGATATACCGCTGCTGCTGAATTAAGCAGTCTATGTAAAAGACCTCAGCGTTTCACTGAGATTGAGGGTTTCTCTGAGAGAAGGGTGCAGGAGTATTTCCAGAAGTTTTTTCAGGATGAGCAACTCTTCAAGAAAGCATATGAGAGCATGAAGACCAATGAAACCCTCCTGACCTTCTGTTCTGTGCCTTTGCTGTGCTGGATGGTCTGTTTTTGTCTGAAGAAAGATGCTGATCAGGTGATGACAGAACTAAAGACCACCACATCCATATATGTGCACTTTGTGTCGACTCTGCTGGAGGATCATCACCAGAGTCAGTCTTTCCTCAGGAGTCTTGGTCAGCTGGCAGAGGAAGGGATGAAGAACCGACAAAACCTGTTTGATGAAAAGAGTGTAACCAGGACTGGCTTAGATCCTGCTACTAGAGTGTTCATGAATAAAATTTATCTTAAGCGAAAGAAAAAACATGAACTACTTTTCAAGTTTAAGCATTTGAGCTTTCAGGAGTTCTTCGCTGCTCTTTATTATATCATGCTGGATGAAGAAGAGTCTTGGTGCAAAGTCAGTGAGCTGTTTAACATGATGGAATCAGAGGCTTTAATCCACAGGTCACCTCCCATCTTTAGAGGCAGATTATCAAATCCCATCCCTTCTGTCATGATGTTTCTCTGTGGCCTCTTTAATAAGAAGGTGAGCAGCTCACTTTTTGAAAAGATGAAGTCTACTTTTTCTCACAACGTAAAGCTGAAGAAAAAAGAACTGAAGAAAAAGCTGATGAAAATGATCCCTGCAATGATACGTCAGTATGGGTTTGAATTGTTTGCTCTTCACTGTCTGTATGAGCTCCAGGATGAGAGATTTGTCACGAAAGTTCTGGAAACACACAAGTTTATAGATCTGTCTAATGTTTCTCTGAGGAGCACAGACTGTTTGGTGCTGTGCTACTGTCTTCGGTTGTGTCCAAACATCAGAGAGCTGAACTTCATGAACTGTGATTTAACAGCTGCTAAACTCAAGATTCTTCAGCCGGCTCTTGGTCTGTGTGAGACTCTGAGGTTTTCAGTGGAGCATCTGTCAGAGATCGGGGATTTGATCCAGATTCTTAGTGAATCAAAAATCTTGAGAGAGCTCAAAGTTCGAGAGGATGAATATGGTGTTGAGAGCCCTAGATGGTCATTTAACCTTTCAGTCACTCGTGGAGATGTCTTGTTGACTTTGAGCTCATCGGAGAAAAATCCATCATTTTCATCAGTCTTAAACATCAGACTTACATGTGCACAATCACAGATATCCAGAACTGACTGGACACTCTTTCTTCAGAGACTCCGTAAGACAGGAACATTAACTGAAGACTCTTCAGCTGATGATGATCATGTCAGTTTGCAGCTGTCTTCACTTCACTCTGTGGGATTGAAGTCGTTGGATCTGACGTTGGTCAGTCTGAATGAGAGCTGGGCTTCTGGGATCATTTCCCTCATCCAGAACTGCACCAGTTTACAGCAGCTCAAAGTCAGTGTCACTGGTTTGCTGTTGGAGGAGGGACTGAAGTTACTGAAGAAATCACTGACAGATCCACACTGCACCGTGATCATTGAAGGGAGGAGGAATTGCAGTGAACCCTCAGAAGAGCACTTGAGGCAAAGTTATGAGAAAGTGGAGATTCACTTCAAACCAAAGCTTCTGGAGGAGCTGGCAGAGCTGAGCATCTGTAACCCTGGATCTTCTGCACTCAATATTCATTGTCAGTCTTGTGTCGACGTTGCTGATTCAGATCAGTGGGTTCAGGTGGAGCCGTCAGTCTGTAGAGGTGAAGGAGGCACAGAGTTCAGGATCACCACTCCGGCGGGTCGATTCCAGTGCAGCAGGACCAGAATGCGATGGGTTTGTGATGGAGATGTCACACTCCACTACCGGGCAGTGGATGGACATTTCCTCAACGCAGAGCTGGAGAGGCTTCAGTGCGAGCGAGTCGCTCCTGTGCTGGATGTGAATGTGATCTCAGGGAAACTGGAGGAGGCTCATCTGCCTCATTACATGTGTTTAGCAGAGTCAGACCCTGCACTCACCAACGCCGTCAAGCTCCTCAGTGTTGAAGATGAGGGAATATCCTTGGAGTCTGTGGAGTTGACTCGCTTTCATGCTAAAATCCTCCAACCAATGTTTTCTCCTAAGACAGTGCTTGTGAAACTAGGCATACCAGTGAAAGTGCACTGTGATCTACTTATCTTCATGACACATACTTGCCCCATCATTCTCAATGTGTATTTTTTCCCATCCGATTCACTTGTtgaagaaaatattaaaacagaggaaaaatcaagtCACCAAATCAAGTGTTCAAGACCTGAAGCCCCACTGCAGATGAAGAAACAACACAGCCTTGAGGTTCCTGATGCTGTTGTTCAACCTGAAGCAATCAAATTGAGAGGTAACATGAAGCCAAACTTCTTTCAGGTCAAACAACCAGTGGTCAATGACATCACTATGATCCTCAGCCGAGTGGATGATCAGAAATCAGTATGGACAGGAACAATTTGGAAAAAACTGATCgatataaaactaaacaaaacagagTCGGACTTGTTTCAGTCTGGACAAAAACACAAGACATCACAGCCTGCTCACAGCTTTGACAAAGCTCAGTTTTTTGATACACATTGGTGTAATCTTATTAAAAGTGTTGAAAATGTGGACACCGTTGCAGACAAACTGCTTCAGAAACAAATCATTCATGAACAATTTTATTCTGAAATCATACATCACAAATCAACCAGTGAGGAAAGCATGAGAAAGATATGCGTCATAGTGAGGAAAGGTAGCGCCGCTGTCAAAGAGATCTTCATCTCTATTCTTCTGCAAGAAAATCCCAATCTTTTAAATCATCTGCCTTCATCTGACTCCTAATCTGTTTCTTGTGAGGATTCTATATGTAGTATTTTACACAAATGATGAAATGACAAGGAAACTACAAGTGATCAGATCTTACATCTTATGCTGCAGCTTTTGGAGAATACTATTTTCAGATTTCTCACTGTTAGCCTTTCGCTGACTAAAACACTGAATTTCTATGACCTATATTGAATGGAAACACAAGGCGCTATTATGCCCTGCAGAATATATATTCGAATTTAAATTTAATAGCCATAACAGATAATTTACCTTAgatttataaaacaaatgaatcagAAACAAGAGTGTCTGACACtcagggcatactcacactaggcaCAATTGTTTTGAggcccatgattttatagttt
>TCONS_00031489
ATGATCATGTCAGTTTGCAGCTgcaccattAATCACcaagctaataccatccctacagtgaagcatggtggtggcagcatcatgctgtggggatgtttttcagcagcaggaactggaagactagtcaggatagagggaaagatgaatgcagcaatgtacagagacatcctgaatgaaaacctgcttctgaGTCTGAAGCAAACTTCGGttctagtcaaagtcctgacctga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000088423

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031488 False 3934 mRNA 0.42 8 45479841 45487853
TCONS_00031489 True 231 mRNA 0.46 3 45484183 45550327

Neighbor

gene id symbol gene type direction distance location
XLOC_015847 NA coding upstream 11256 45468067 ~ 45468585 (+)
XLOC_015846 NA coding upstream 17867 45461133 ~ 45461974 (+)
XLOC_015845 si:ch211-66k16.2 coding upstream 22949 45454415 ~ 45456892 (+)
XLOC_015844 si:ch211-66k16.27 coding upstream 31550 45441007 ~ 45448291 (+)
XLOC_015843 NA coding upstream 46213 45432582 ~ 45433628 (+)
XLOC_015853 fndc7a coding downstream 14886 45565213 ~ 45565811 (+)
XLOC_015854 fndc7rs2 coding downstream 43456 45593783 ~ 45598651 (+)
XLOC_015855 fndc7rs1 coding downstream 69622 45619949 ~ 45626763 (+)
XLOC_015856 fndc7rs3 coding downstream 85707 45636034 ~ 45639159 (+)
XLOC_015857 fndc7rs4 coding downstream 92795 45643122 ~ 45652375 (+)
XLOC_015832 NA non-coding upstream 490548 44984483 ~ 44989293 (+)
XLOC_015827 BX323035.2 non-coding upstream 915347 44564378 ~ 44564494 (+)
XLOC_015862 NA non-coding downstream 506479 46056806 ~ 46060001 (+)
XLOC_015863 NA non-coding downstream 644000 46194327 ~ 46332513 (+)
XLOC_015864 NA non-coding downstream 730375 46280702 ~ 46317783 (+)
XLOC_015865 CR356240.1 non-coding downstream 738533 46288860 ~ 46288996 (+)
XLOC_015868 NA non-coding downstream 1217236 46767563 ~ 46814415 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G123742 NA unknown NC_053123.1 CM020920.1 14233332 ~ 14234070 (+)
striped catfish (Pangasianodon hypophthalmus) G140830 NA non-coding NC_047602.1 CM018548.1 29158731 ~ 29166206 (+)