XLOC_015852 (fndc7a)


Basic Information

Item Value
gene id XLOC_015852
gene name fndc7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45548890 ~ 45567702 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031493
CACCTGAGGTTCCTCTCATAGAGAAGGCTTACTCCAAACGCAGTGACAGCATCACGGTGGAGTTTGGTATAGTTTCTGGTGCCACCGGTTACATAATCCGGGCAGAGAATGATAATGGGTTCTTCTCTGAAACTCCAGTGCTGAAATCCCCAGAGACAGTGGTCGGTCTTGACCCTTACACAGATTACACCCTCAGTGTGATGTCCGTCAACGTGGGGGGAAGGAGTCAGCCATCCCTGCCAGTGGATGCTAAAACAGTGTTGGTGGCCCCAAATCTGCGTTCCAGTTCTCCCAGCAGTGATTCCATCATGATAACCTGGGATCCAGTGAACAATGCTGTGTTATACACCCTAGTCATGATCATGGAGGGTTCAGACACGCGGGACAAACTCAACACCTCTGGGACCAACATGACATATAGTGGCCTTCAGCCCGGCACCACCTACTGCATCAAGGGCAATGCCTGGGATCCAGAGGGTAACCAAGGAGATGACATCACCATCTGTCAAATCACACTCCCGTGTCCTCCTGATGTGGTGTGGATCAAGGAGGTGACCCCAGGGAACTGCTCCGTCATGTGGTCAGATATTCCATGGGTGGATTATTGTATCGCCTACGTAAAAAGAGATGATGGTTTAGAGGAAAACTGCAACACCACCGGCAGGTCCTGTCACTTCCAGTGCAAGTGCGGATACACCTACCTCTCCACTGTATTCGCTTACAACCAGGCCGGATCCAGTCCACCGGGACAAATAGTCAACTATACGACAATCCCATGCTGTCCAGAGGATGTGTCCGTGTCCCTGATTTCCACAGAGACGTTGGAGATCTCGTGGTCAGCAGTTCGAGGAGCGGAGTTATACGAGACCATTGCTGCAGATGGAAGTGAACAGATCCACTGTAACGACACGGCTCCAGTGTGTGCGCTGTCAGATCTCACCTGCGACAGCATGTACAGTGTGGTGGTGCGGCCCTGCAGTGAGATACGGGGATGCAACAACACCTGCCCAGCACACACACGCCAGACAGCTCCCTGCGCTCCTGTGATCCTCAGCGTGACTCAGGTGAACtcctccacagtgcaggtgttcTGGACACCCACAAACACTCAGGCAAACTACAGCATCATAGCCGAGGGTCAAACAGACTCGCTGTCCTGCTCATCCAGCGGGACGTCCTGTTACATGAGTGTGACCTGTGGGTCCATGTATGAGGTCAGTGCTTACGCCACTACTACAGCCGGACTGAGTCTTCCCAGCTACGCCGTTCCCCTGGAGACAGGACCGTGTTGTCCAGAATATCTGAATGTTGAGCAGGTCACTCAGTCCATGACAAACGTCACCTGGTCTCCAGCTATAGGTGCGCGTTCATACATCACCTCTCTGACATCACCCAGAGGACATGCCAAGTGCCACACCATGGACACAGACTGCCTGCTGGGCTGCATCACGTGTGGCACCAGCTATAATGTGTCCCTGGAGGCCTTCAGCATCACTGGACATAAAACAGAGTGCACATACCAAGGTTTCTCTGCAAGCTCCTGCTGTCCCTCCAGTGTGAAGCTCTACCGGATGCCTAACAGCACTCTGCGGGTTAACTGGCGCTATTCCCCTGGCCTCTACAACTACACTGCAGACCTGTATGGCACCAGATCCAACTACACCTGCAGCAGCACAGCAGGAGCAAACACCTGCGATGTCTCCGAGATCCTCTGTGGAGAAGTGTACACGGTCGTAGTCGCTCCTCTGACCAAAGACGGCACAAAGGTCACATTCTGCCCTAGAAAACTTTACTCAGTCTCCTGCTCTGGAAACACTGTAGGAATGGTGATCTATCGAGGCCGAAGGAGTGTTGGCTAGAACTTCCTATTGGCACAGATGAAAGAAGATGGAATCTGACCTCAACAAAGACATCAACACATTCAAGTTCAACTTGCCACATTTATATACTGTTTGCCAAGAAAAGCATTTACAATTGGTTCATTGACAGTGTCATTTTATCAAAGAGAAAGTGTGATTTATGTATAGATTTTGCAGTTATACTGCCATTTTCTAATATTTAAACCATGCAATAAAGCCCAATTGTATTAACAATCCCAATTCCGAAAAAAGCTAGGATGttcctaa
>TCONS_00031494
ATCAAGGGCAATGCCTGGGATCCAGAGGGTAACCAAGGAGATGACATCACCATCTGTCAAATCACACGTCCTCCAGTCCCAGGAGATGTGCAGGTTCAGTTGACGCCGGGTCGCTCTATCGATCTGGCGGTGTATTGGCAGTCAGTGCGTGGTGCCGATGGCTACATTGCTGTAAGCTCAACGGGACAGAACTGCAGCTCCAACGAAGAGGTTTACTGCATTATCAGTCCTCTCAGCTGCAGCCAGAACCACTCCATCACTGTCGTAGCACAAAATGCAGCCGGATACAGTGACCCTTCACAACCACAAGACCTTCTGACCTTCCCGTGTCCTCCTGATGTGGTGTGGATCAAGGAGGTGACCCCAGGGAACTGCTCCGTCATGTGGTCAGATATTCCATGGGTGGATTATTGTATCGCCTACGTAAAAAGAGATGATGGTTTAGAGGAAAACTGCAACACCACCGGCAGGTCCTGTCACTTCCAGTGCAAGTGC

Function

symbol description
fndc7a Is expressed in neuromast support cell. Orthologous to human FNDC7 (fibronectin type III domain containing 7).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070216-2 Is expressed in neuromast support cell. Orthologous to human FNDC7 (fibronectin type III domain containing 7).

Ensembl:

ensembl_id ENSDARG00000077096

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031493 False 2126 mRNA 0.51 10 45548890 45567702
TCONS_00031494 True 495 mRNA 0.53 3 45552901 45556271

Neighbor

gene id symbol gene type direction distance location
XLOC_015851 aknad1 coding upstream 10955 45532437 ~ 45537935 (+)
XLOC_015850 aknad1 coding upstream 26020 45521883 ~ 45522870 (+)
XLOC_015849 aknad1 coding upstream 33442 45511459 ~ 45515448 (+)
XLOC_015847 NA coding upstream 80305 45468067 ~ 45468585 (+)
XLOC_015846 NA coding upstream 86916 45461133 ~ 45461974 (+)
XLOC_015854 fndc7rs2 coding downstream 26081 45593783 ~ 45598651 (+)
XLOC_015855 fndc7rs1 coding downstream 52247 45619949 ~ 45626763 (+)
XLOC_015856 fndc7rs3 coding downstream 68332 45636034 ~ 45639159 (+)
XLOC_015857 fndc7rs4 coding downstream 75420 45643122 ~ 45652375 (+)
XLOC_015858 gpc5c coding downstream 129041 45696743 ~ 45806367 (+)
XLOC_015843 NA non-coding upstream 115262 45432582 ~ 45433628 (+)
XLOC_015832 NA non-coding upstream 559597 44984483 ~ 44989293 (+)
XLOC_015827 BX323035.2 non-coding upstream 984396 44564378 ~ 44564494 (+)
XLOC_015862 NA non-coding downstream 489104 46056806 ~ 46060001 (+)
XLOC_015863 NA non-coding downstream 626625 46194327 ~ 46332513 (+)
XLOC_015864 NA non-coding downstream 713000 46280702 ~ 46317783 (+)
XLOC_015865 CR356240.1 non-coding downstream 721158 46288860 ~ 46288996 (+)
XLOC_015868 NA non-coding downstream 1199861 46767563 ~ 46814415 (+)

Expression


Co-expression Network