XLOC_015863


Basic Information

Item Value
gene id XLOC_015863
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 46194327 ~ 46332513 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033660
ACTTTTTTTTGCTAACGTTAGTCCAATTGCAAATGAATCGTGTAAACGCAGCTTGTGACTGACTACTGACTTCTGAGATTAACATCAAACATCAGTCCTTCATTAAAGAACAGATGTGAGGATCCTTGCTCAAACTTAGGCCTGCAGTAGTGTAAACATCGCAAACGATTCCAAAACCATCCAAAATCAGTGTGCTACATACAAAAACCGGCCTGGAATGTAGTAATTGAGTGGATCGCTGTGACCGAGATTCCAAACGGAGAGTAAGCGGTGCACTGTAAATCCATTTCGGGATTTCCAACTCATCTCTTGCAGATGACAAAAACCGCTAAAGTTGTCACCTTAGCAAGCGCTGAAGGATCGAGCCATTTTACTCTCCTACACGAGCAAATTAC
>TCONS_00033659
ACTTTTTTTTGCTAACGTTAGTCCAATTGCAAATGAATCGTGTAAACGCAGCTTGTGACTGACTACTGACTTCTGAGATTAACATCAAACATCAGTCCTTCATTAAAGAACAGCGCAAACGATTCCAAAACCATCCAAAATCAGTGTGCTACATACAAAAACCGGCCTGGAATGTAGTAATTGAGTGGATCGCTGTGACCGAGATTCCAAACGGAGAGTAAGCGGTGCACTGTAAATCCATTTCGGGATTTCCAACTCATCTCTTGCAGATGACAAAAACCGCTAAAGTTGTCACCTTAGCAAGCGCTGAAGGATCGAGCCATTTTACTCTCCTACACGAGCAAATTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033660 False 395 lncRNA 0.42 4 46194327 46332513
TCONS_00033659 True 349 lncRNA 0.42 3 46194327 46332513

Neighbor

gene id symbol gene type direction distance location
XLOC_015861 gpc1b coding upstream 9737 46032678 ~ 46184590 (+)
XLOC_015862 NA coding upstream 134326 46056806 ~ 46060001 (+)
XLOC_015860 CR762395.1 coding upstream 181583 46009507 ~ 46012744 (+)
XLOC_015859 si:ch211-170p16.1 coding upstream 273124 45918939 ~ 45921203 (+)
XLOC_015858 gpc5c coding upstream 387960 45696743 ~ 45806367 (+)
XLOC_015866 FQ377603.1 coding downstream 78566 46411079 ~ 46489869 (+)
XLOC_015867 ephb1 coding downstream 257285 46589798 ~ 46728027 (+)
XLOC_015868 NA coding downstream 435050 46767563 ~ 46814415 (+)
XLOC_015869 NA coding downstream 497721 46830234 ~ 46843007 (+)
XLOC_015870 NA coding downstream 514350 46846863 ~ 46882199 (+)
XLOC_015847 NA non-coding upstream 725742 45468067 ~ 45468585 (+)
XLOC_015846 NA non-coding upstream 732353 45461133 ~ 45461974 (+)
XLOC_015843 NA non-coding upstream 760699 45432582 ~ 45433628 (+)
XLOC_015832 NA non-coding upstream 1205034 44984483 ~ 44989293 (+)
XLOC_015871 NA non-coding downstream 570695 46903208 ~ 46927052 (+)
XLOC_015872 NA non-coding downstream 610584 46943097 ~ 47099564 (+)

Expression


Co-expression Network