XLOC_015868


Basic Information

Item Value
gene id XLOC_015868
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 46767563 ~ 46814415 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033663
TGTTAGTGTTCCTGGTTCTGTGTGGAAGCCATGTCAGACATGTGCTTTCTCTGAAAATCTAAAGCATCCACCTAAAATCATCATAGAGGCAATGCTGAGCATCTCATTTGACCCGGCGCTGAACGGGTGACAGTCTGAGCCTTTTCTCCTCCAGGTCGTGACACGAGGGCTCAAACCCACAGCTGTGTCATAGACAGGTGCACTGCGTCATGACTGCCAAAGCTGTCAGGCTGGATATGTGATCTGGATCTGGAAAGGATTGGCAGAATCCAGACATGCCCTGCTGCTGAATCATGCCAGTGGGATTATGGGATTCCTCACAATGAAAGAACAGATTTAAACATACACATCCATTCTTCATGGTCGCGGTGAAGGCCTTCAACCCTGCAGGTGGTGAATTAAATCTACGGTGAGATCACAGATGGGTTTGTCTCAGCTACTAACACAGCCtattgtgtgcgtgcgtgcatgtgtgtgtgggtttgtgtacCCATATTTATTATGGTTCCTGGACTTGTGGTAATGACACTTTCATTGAGTGGATTGGGCAGAGACAGATGGGCCCTGGTTAAGTCTAGTTTTTAAGGTGTTTTCACATTGCCTTTTTTTTTGCCTCACTTGCTCACTTTAGtcatttgtaaaaattaatggttatttaaaattaaatgtatgcatttgtaCCCTAATATAGTACCAGTgatttgttctgaagacaatagAGTATAATATTAAGGGTGCCTATTGTAACGTATGAGTCAGAGTACAGTGGAGTTGAGGGTCCAAACGCAGTTTATTTACAGCTTAGTCAGGCTTGTGACAGTCAAACATGACATGAAACAGTAACATGAgggtaaattaaaaaatgtagacGTGGTTACAGACAGAAGTCGGTGTAGGCAGCAAACaggacaaaacaaaaatcaaaaaccaCGGAAGGACAAGGCAAAGAAAAAGCTTAGAAATGTTACAGGGGAGGAAGACTCAGCactgtatgtgtgaatgtaaggtgtactgtatatatagtcCTGGTAATCAGTTTATGTTAAGCttcctggtgtgtgtgtgtgtggaatcagggagagaactggaactggtgtgtatgtgaggtgcatgatgggatttgtagttttcCAGCAATCTGTAACTGCTGATTTTGACATTAGTAT
>TCONS_00033664
GTTCTGTGTGGAAGCCATGTCAGACATGTGCTTTCTCTGAAAATCTAAAGCATCCACCTAAAATCATCATAGAGGCAATGCTGAGCATCTCATTTGACCCGGCGCTGAACGGGTGACAGTCTGAGCCTTTTCTCCTCCAGGTCGTGACACGAGGGCTCAAACCCACAGCTGTGTCATAGACAGGTGCACTGCGTCATGACTGCCAAAGCTACCAATAAATCACCAGATTGTATAGGGCTGACGGAATGTTTACCTGTTGGTGCCACTTGACAAATCCCACTCCATGAGATTCTCATCCTAGGATGTGATCATTCTGATCTCTTCTCAAGATACAGTCAGGCTGGATATGTGATCTGGATCTGGAAAGGATTGGCAGAATCCAGACATGCCCTGCTGCTGAATCATGCCAGTGGGATTATGGGATTCCTCACAATGAAAGAACAGATTTAAACATACACATCCATTCTTCATGGTCGCGGTGAAGGCCTTCAACCCTGCAGGTGGTGAATTAAATCTACGGTGAGATCACAGATGGGTTTGTCTCAGCTACTAACACAGCCtattgtgtgcgtgcgtgcatgtgtgtgtgggtttgtgtacCCATATTTATTATGGTTCCTGGACTTGTGGTAATGACACTTTCATTGAGTGGATTGGGCAGAGACAGATGGGCCCTGGTTAAGTCTAGTTTTTAAGGTGTTTTCACATTGCCTTTTTTTTTGCCTCACTTGCTCACTTTAGtcatttgtaaaaattaatggttatttaaaattaaatgtatgcatttgtaCCCTAATATAGTACCAGTgatttgttctgaagacaatagAGTATAATATTAAGGGTGCCTATTGTAACGTATGAGTCAGAGTACAGTGGAGTTGAGGGTCCAAACGCAGTTTATTTACAGCTTAGTCAGGCTTGTGACAGTCAAACATGACATGAAACAGTAACATGAgggtaaattaaaaaatgtagacGTGGTTACAGACAGAAGTCGGTGTAGGCAGCAAACaggacaaaacaaaaatcaaaaaccaCGGAAGGACAAGGCAAAGAAAAAGCTTAGAAATGTTACAGGGGAGGAAGACTCAGCactgtatgtgtgaatgtaaggtgtactgtatatatagtcCTGGTAATCAGTTTATGTTAAGCttcctggtgtgtgtgtgtgtggaatcagggagagaactggaactggtgtgtatgtgaggtgcatgatgggatttgtagttttcCAGCAATCTGTAACTGCTGATTTTGACATTAGTAT
>TCONS_00033300
CATGGTTTTGAGATTTGCACTGATCCTGCTTTCTCCCATCACAGGAGCATCTCATTTGACCCGGCGCTGAACGGGTGACAGTCTGAGCCTTTTCTCCTCCAGGTCGTGACACGAGGGCTCAAACCCACAGCTGTGTCATAGACAGGTGCACTGCGTCATGACTGCCAAAGCTGTCAGGCTGGATATGTGATCTGGATCTGGAAAGGATTGGCAGAATCCAGACATGCCCTGCTGCTGAATCATGCCAGTGGGATTATGGGATTCCTCACAATGAAAGAACAGATTTAAACATACACATCCATTCTTCATGGTCGCGGTGAAGGCCTTCAACCCTGCAGGTGGTGAATTAAATCTACGGTGAGATCACAGATGGGTTTGTCTCAGCTACTAACACAGCCtattgtgtgcgtgcgtgc
>TCONS_00033299
CATGGTTTTGAGATTTGCACTGATCCTGCTTTCTCCCATCACAGGAGCATCTCATTTGACCCGGCGCTGAACGGGTGACAGTCTGAGCCTTTTCTCCTCCAGGTCGTGACACGAGGGCTCAAACCCACAGCTGTGTCATAGACAGGTGCACTGCGTCATGACTGCCAAAGCTACCAATAAATCACCAGATTGTATAGGGCTGACGGAATGTTTACCTGTTGGTGCCACTTGACAAATCCCACTCCATGAGATTCTCATCCTAGGATGTGATCATTCTGATCTCTTCTCAAGATACAGTCAGGCTGGATATGTGATCTGGATCTGGAAAGGATTGGCAGAATCCAGACATGCCCTGCTGCTGAATCATGCCAGTGGGATTATGGGATTCCTCACAATGAAAGAACAGATTTAAACATACACATCCATTCTTCATGGTCGCGGTGAAGGCCTTCAACCCTGCAGGTGGTGAATTAAATCTACGGTGAGATCACAGATGGGTTTGTCTCAGCTACTAACACAGCCtattgtgtgcgtgcgtgc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033663 False 1166 lncRNA 0.43 3 46767563 46814415
TCONS_00033664 False 1276 lncRNA 0.43 4 46767577 46814415
TCONS_00033300 False 416 lncRNA 0.50 2 46776773 46813717
TCONS_00033299 True 540 lncRNA 0.48 3 46776773 46813717

Neighbor

gene id symbol gene type direction distance location
XLOC_015867 ephb1 coding upstream 39536 46589798 ~ 46728027 (+)
XLOC_015866 FQ377603.1 coding upstream 277694 46411079 ~ 46489869 (+)
XLOC_015863 NA coding upstream 435050 46194327 ~ 46332513 (+)
XLOC_015864 NA coding upstream 449780 46280702 ~ 46317783 (+)
XLOC_015865 CR356240.1 coding upstream 478567 46288860 ~ 46288996 (+)
XLOC_015869 NA coding downstream 15819 46830234 ~ 46843007 (+)
XLOC_015870 NA coding downstream 32448 46846863 ~ 46882199 (+)
XLOC_015871 NA coding downstream 88793 46903208 ~ 46927052 (+)
XLOC_015872 NA coding downstream 128682 46943097 ~ 47099564 (+)
XLOC_015873 BX248512.1 coding downstream 298281 47112696 ~ 47113654 (+)
XLOC_015862 NA non-coding upstream 707562 46056806 ~ 46060001 (+)
XLOC_015847 NA non-coding upstream 1298978 45468067 ~ 45468585 (+)

Expression


Co-expression Network