XLOC_015870


Basic Information

Item Value
gene id XLOC_015870
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 46846863 ~ 46882199 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033666
aaaaaaagaaaaaaactatacttatgttcaatacttatttacccTGCTGTATATTGTAAATAtctaaatctgttaaataattacataattttataatgattcagttaaaataaatgtatatggtaAAAACATGTCTAGGTGTAGAAAAAGTTGGAGTAAGTTGTCGCGCGCATACGTGGGGGGAGGGGGGATTTCGATCATTTCAGAAGGGCtatttctatccaagactaaaaagggcatgtgcactgcacaggttgagccctatgtgtgcacgtgcctgtgttCGGTAATATCACTTTTTAGtcaaataataagttattttcctggtctttaaagtaaaataactcaacataaacaaaggaggctgaacTCTTCAGATCCAATTAGATAAAATTCTATGAGATTGGCTCACTTAACCCCATACTCCACACAATTGGTACATtaataagaaacatttaaatcacattgtaattattaatatatttatcattattattaaaataatcattttgagccgtcatacaaaatatgattatttagctttttgcaAATGTTTATACAAGTTATTAATATTCCTATactttgtaaagtaatatgttctgtctcTTTGTGTGTTAAATGTGTAACACAATACTGGCAACAGAGTGAGGGATCCAAAATGCTGCGCGTTTATTAGGAGAATCGTCAGGCAGGAAAGGTCACAACAGAAGCATGCAGGTAATCCAAAAGAGTAGTCGGGGTCATAAGCAGAGAGATTAGTACAGGCGCCAAACAACATGAAACaataaacaaggcgagggtcagGAAACACAGTGAGGCAAGAAAATGAAACTCTTCGTAATTCTACACAGGGAAAGCAAGACTTAGAAAAGTGGGGTGCAGCATTCCAATTCGCATACTatccgtcctaaatagtattcgaaaatagaattagtatgtcccaaatcattgtatgttgaaaagagtatgccaaaggttcacggatggtttactatttctggTAAAAAAATTTAAGTGTAGAACAGTCTATTCTCTAAtcgctgatattgcccacagtacATTGCGCGTTGGACACGAATTcgaataaaattgtaaataaactacaaatatgATGGACACGCGAGACCAACCATCAAGTAGGGAGGCTTCGGTAAAcatgtttgtatgactgttaatatctagccaactggaaaatatttaaatccagTTTTCTGTTATATTTCATTTGCAACAATAATATTGAACCtatataaagacgtgtttggacattaacgtatgaatgcataattatccatAAATCTGCAGGATTTCTCCACATGAATGACTCATGAATGGCAGAtcaacctgctgctgcttctccaataagcgaggatgactggaggagaactGACTTGATCTGGCCAATGTCATCAGGATTACAGACCCTAAGGGATCCACGGGTCAAACTCTTCCAGCACTTTGAGCTCCTGGAGTGTTTTGAACGTGTATAAACTGTGTGTGCATCTGCTTGTGTCTTGCCCACTCTGTGGTAAACAGCTTGTCGGCTTCTACTGGCCTTCTGACATATGGTTCTGACAATCAAACAGCTGACCCAAGGAAGACTGAGACGCCAGATCATATTCCTCACGCTGAGGTTTAACCTTGCCTTCATCTCCGTGTGAGTCATCGGTCAGCCAGATGGGAGCGGACAGCAATACTTTTTTGTAtgtggaaatatatatttttttctagcgAGGTCTGCTCAAGGATGGCAGGAATCCAGACGGACTGATGGCAGCGCTTGGCCAGGGAAATGGAAGATCAGACAGAACCCTCCGGAGCAGTTCTCAGACACCTGCAGAGATCCAACATGGCCTCCTGCACAGTACAGTTTCATTATCGACGGTCCGATCACTGCCGATCGATCGCATCTCCCCACCCACGGAGCTCCATTTTGGTCTGAACAGTTCATAGAGATAATAATTATGAAGCATGACAGCTGGGAATGAGATtagctgtcagtgtgtgtgtgagtgagattgATTTTTATCTAGATTtttacagtttgtgtgtgtgcaagccAAGGTCAAGGGGTGATGACACACACgagcacaaacatacacacacacagAGCAAGACACTGACTCTCACAGctcaaggatggatggatgatctaCACTTAAGAGGTGTTTTCACAAGATCACAAGCAGATGATCCTAAATACAGgtggaCTGTTGCCCAatactcaacccccaacctggaggacaagaacatacacacatataatacagacaatttaacttacccaattcacctatagcacatgactTTCAacatgtgggggaaactagagcaccctaaggaaacccacgccaacacgaggagaaaatgcaaactttaAAGAGAatcaccaactgacccaggcggtgctcgaaccagcgaccttcttgctgtgaggcaacagcactacccactgtgccacccttttCCAATCATATATGCCTTTTTTCTGGGAAACAGAAAACTTACTTTctaaagaaaggaaaaaaatctCTTTGTACTGTTAAAATTAATGGACTTCAGTCTTGTTTAGAACTCtgtgttcttcaaaatatcattttGTGTtccaaagggaaaaaaaagatgcTTAAAAAGACATGGGAATAAGTAAATGTCTATCCCTTTAATCTTATTCATCTGTCCAAGAAGAGCACGGATCcactttaaacacttttaaaggGACAAAATACCTCATCGGCCATGTTTTTAAATGACCCCCAGAGAATGAAAGCAGGACACTGAGATATGCATCTTCATCTTTCCCAGAACACACTGTGCCTCTCATTGGAAATCCATAAAAAGCATACACTCCTGGAAACCTGATTAAGTTTGAGCTCTGTTAGCAgagaaatttaaattaatttgagaGATCAGCCTGAACCTCTCTATGTCCCATTACGGCAAGCCGGGCTCATTAAGGTACCAAATAGATGCTCCGGGTCTGTACGCGCAGGGCAAAAATCTGCGGCTGACAGATGCGGTTGAGTTGTGCTTGGCAGCCGGTCGCTCGTGTCATCATTGATCTCACTCACTCTCCAGCAGCAAACGGGAAGAGAGCAAAGCCTCTGTGttgtgcagaaaaaaaacaacattgtttaTAAGAAAGGCGTCCTGGAAGGCTGCGGACCTTGGCCAAACCTCTCAGTGGAGTTACCGTACTTCCAATTATTTCTGTGTAGGAAGTTCCTGCATCTCAGTGCTGGAGACTTGGCAAAATTAACAGGGGAGCCACTAACCTTTAGTGCATGACAGGCTGTGCTGAATGAGAGATCTTTCCAGAGAAATGGACcatttttcctctctctttcCTGTCTATCTTGCTGTCTGTTCATGAATGTATTATTTTGCAATTCTCTATTGAATGCTAAGTAAGGTTCAGACTGGTTGTTGTAGGGGTAGAAATGGCTTTTTTGCATATCAGGTGGCTCAGTGGgaa
>TCONS_00033667
ccactcattttgttttgttttgtttttttcgcgggagcaacagcgaggatgactggaggagaactGACTTGATCTGGCCAATGTCATCAGGATTACAGACCCTAAGGGATGGCTCAGTGTTTGGCACTctcaccccacagcaagaaagtctctggtttTAGTCttagctggaccagttggcatttctgtgtggagtttgcatgttctcgccgtgtttgcgtggatttcctcctggtgctctggttttccccacagttcaaagacatgcactataagtaaattggGGATCCACGGGTCAAACTCTTCCAGCACTTTGAGCTCCTGGAGTGTTTTGAACGTGTATAAACTGTGTGTGCATCTGCTTGTGTCTTGCCCACTCTGTGGTAAACAGCTTGTCGGCTTCTACTGGCCTTCTGACATATGGTTCTGACAATCAAACAGCTGACCCAAGGAAGACTGAGACGCCAGATCATATTCCTCACGCTGAGGTTTAACCTTGCCTTCATCTCCGTGTGAGTCATCGGTCAGCCAGATGGGAGCGGACAGCAATACTTTTTTGTAtgtggaaatatatatttttttctagcgAGGTCTGCTCAAGGATGGCAGGAATCCAGACGGACTGATGGCAGCGCTTGGCCAGGGAAATGGAAGATCAGACAGAACCCTCCGGAGCAGTTCTCAGACACCTGCAGAGATCCAACATGGCCTCCTGCACAGTACAGTTTCATTATCGACGGTCCGATCACTGCCGATCGATCGCATCTCCCCACCCACGGAGCTCCATTTTGGTCTGAACAGTTCATAGAGATAATAATTATGAAGCATGACAGCTGGGAATGAGATtagctgtcagtgtgtgtgtgagtgagattgATTTTTATCTAGATTtttacagtttgtgtgtgtgcaagccAAGGTCAAGGGGTGATGACACACACgagcacaaacatacacacacacagAGCAAGACACTGACTCTCACAGctcaaggatggatggatgatctaCACTTAAGAGGTGTTTTCACAAGATCACAAGCAGATGATCCTAAATACAGgtggaCTGTTGCCCAatactcaacccccaacctggaggacaagaacatacacacatataatacagacaatttaacttacccaattcacctatagcacatgactTTCAacatgtgggggaaactagagcaccctaaggaaacccacgccaacacgaggagaaaatgcaaactttaAAGAGAatcaccaactgacccaggcggtgctcgaaccagcgaccttcttgctgtgaggcaacagcactacccactgtgccacccttttCCAATCATATATGCCTTTTTTCTGGGAAACAGAAAACTTACTTTctaaagaaaggaaaaaaatctCTTTGTACTGTTAAAATTAATGGACTTCAGTCTTGTTTAGAACTCtgtgttcttcaaaatatcattttGTGTtccaaagggaaaaaaaagatgcTTAAAAAGACATGGGAATAAGTAAATGTCTATCCCTTTAATCTTATTCATCTGTCCAAGAAGAGCACGGATCcactttaaacacttttaaaggGACAAAATACCTCATCGGCCATGTTTTTAAATGACCCCCAGAGAATGAAAGCAGGACACTGAGATATGCATCTTCATCTTTCCCAGAACACACTGTGCCTCTCATTGGAAATCCATAAAAAGCATACACTCCTGGAAACCTGATTAAGTTTGAGCTCTGTTAGCAgagaaatttaaattaatttgagaGATCAGCCTGAACCTCTCTATGTCCCATTACGGCAAGCCGGGCTCATTAAGGTACCAAATAGATGCTCCGGGTCTGTACGCGCAGGGCAAAAATCTGCGGCTGACAGATGCGGTTGAGTTGTGCTTGGCAGCCGGTCGCTCGTGTCATCATTGATCTCACTCACTCTCCAGCAGCAAACGGGAAGAGAGCAAAGCCTCTGTGttgtgcagaaaaaaaacaacattgtttaTAAGAAAGGCGTCCTGGAAGGCTGCGGACCTTGGCCAAACCTCTCAGTGGAGTTACCGTACTTCCAATTATTTCTGTGTAGGAAGTTCCTGCATCTCAGTGCTGGAGACTTGGCAAAATTAACAGGGGAGCCACTAACCTTTAGTGCATGACAGGCTGTGCTGAATGAGAGATCTTTCCAGAGAAATGGACcatttttcctctctctttcCTGTCTATCTTGCTGTCTGTTCATGAATGTATTATTTTGCAATTCTCTATTGAATGCTAAGTAAGGTTCAGACTGGTTGTTGTAGGGGTAGAAATGGCTTTTTTGCATATCAGGTGGCTCAGTGGgaa
>TCONS_00033668
tatatatatattttttcttatctaGGGATCCACGGGTCAAACTCTTCCAGCACTTTGAGCTCCTGGAGTGTTTTGAACGTGTATAAACTGTGTGTGCATCTGCTTGTGTCTTGCCCACTCTGTGGTAAACAGCTTGTCGGCTTCTACTGGCCTTCTGACATATGGTTCTGACAATCAAACAGCTGACCCAAGGAAGACTGAGACGCCAGATCATATTCCTCACGCTGAGGTTTAACCTTGCCTTCATCTCCGTGTGAGTCATCGGTCAGCCAGATGGGAGCGGACAGCAATACTTTTTTGTAtgtggaaatatatatttttttctagcgAGGTCTGCTCAAGGATGGCAGGAATCCAGACGGACTGATGGCAGCGCTTGGCCAGGGAAATGGAAGGTAATTAGTTATTTCTTCTGGAAAATTGCCATTTAATTTCAAATATTGGAGTCTAATTTACATTTAAGTGATTGCGCACACAGGTCAAGGTTAACAGCAGCTGTTATACTCAAATATATGAAGCAGAAGATGTAgttatcctaaaaaaaaaaaaaaaatctgctatttCACTTTACATCATTTTCATGTTCATTACAGCAGGCAGCTTGCAGAATATGC
>TCONS_00033302
ATCATATTCCTCACGCTGAGGTTTAACCTTGCCTTCATCTCCGTGTGAGTCATCGGTCAGCCAGATGGGAGCGGACAGCAATACTTTTTTGTAtgtggaaatatatatttttttctagcgAGGTCTGCTCAAGGATGGCAGGAATCCAGACGGACTGATGGCAGCGCTTGGCCAGGGAAATGGAAGATCAGACAGAACCCTCCGGAGCAGTTCTCAGACACCTGCAGAGATCCAACATGGCCTCCTGCACAGTACAGTTTCATTATCGACGGTCCGATCACTGCCGATCGATCGCATCTCCCCACCCACGGAGCTCCATTTTGGTCTGAACAGTTCATAGAGATAATAATTATGAAGCATGACAGCTGGGAATGAGATtagctgtcagtgtgtgtgtgagtgagattgATTTTTATCTAGATTtttacagtttgtgtgtgtgcaagccAAGGTCAAGGGGTGATGACACACACgagcacaaacatacacacacacagAGCAAGACACTGACTCTCACAGctcaaggatggatggatgatctaCACTTAAGAGGTGTTTTCACAAGATCACAAGCAGATGATCCTAAATACAGGTAAAAGCACCCAGCGggcacacatttaaaatatttttgagtaaagaaatattttaatactCAAAGTAATTTCCATCTTCCTGTTTGCATCTTCTAATGCCTTCATTTTAATCcaggaaacattcattcattcatattctttttggcttagtcactttaataatcaggggtcgccacagcggaatgaaccgccaacttaaccatcatatgttttacacagcagatgcccttccagccgcaaccagtggggaacatggggagaacattgaGTCATTGAATCggtttagaccattagcatttcactcaaaaattaaaaaaatctttttgtcgAGTTGAGTGAaaattgtgcgtgtgtgtaagatCAGCTGATCCCCAGGCCTGCTGagtgcacttttagcttagcataaatcattaaatcagattagaccattagcatctcactctaaaatctacaaatatttttgttgaattGAGTGAAaaaaatgtgcgtgtgtgtgtgtgcatgagtgtgtttaTACATAGATACTTCTTATACTACAAAAGCTTTGATACAGCTTTATATTGCACACATTGCAGTTCACAGTTTTATGCAACAGGAAG
>TCONS_00033303
CTGCCTTTAAACTGGAATTGATGTTACTGTGTTTTCAATCACTCCTCTGACTTTTATTTGTCCCTCTATAATccaaaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaggtcaTGCGTCTGCCCTCATTAAAGGtggtttgttttccttttttttcttttccatgaAGATCAGACAGAACCCTCCGGAGCAGTTCTCAGACACCTGCAGAGATCCAACATGGCCTCCTGCACAGTACAGTTTCATTATCGACGGTCCGATCACTGCCGATCGATCGCATCTCCCCACCCACGGAGCTCCATTTTGGTCTGAACAGTTCATAGAGATAATAATTATGAAGCATGACAGCTGGGAATGAGATtagctgtcagtgtgtgtgtgagtgagattgATTTTTATCTAGATTtttacagtttgtgtgtgtgcaagccAAGGTCAAGGGGTGATGACACACACgagcacaaacatacacacacacagAGCAAGACACTGACTCTCACAGctcaaggatggatggatgatctaCACTTAAGAGGTGTTTTCACAAGATCACAAGCAGATGATCCTAAATACAGgaTGTGGGATCATGTTTGAACTTTGTTTCCTGAGCAATTTGCTAAAATATCATATCACCAGccatccagcctgtgcagattgctggtaaacatagatcacataggactacaaatctgctggtaaatggactacaagaaccagtcatgcaccacacacacacacaaacacacacaaccggttcctgatcttgactgattacattcacacagctgaagctgcccATGGACTGATTACTACActatacagcacacaaacacacagaagttgctgagtcttgtctgCTGTTTATGTGACACTACAACGCcatttcctttgtcttgctttgctgtgttttttgatccttgccttgttttgtttattcctgtctgctgcctgcctacTATGATTTTGGATtgcctttatacatctgtttgccatTTAAAGTCTTTGAAACCGTCTTTATTATAACAGAATAAATATTACAGGGAGAAGATTTTACTGCGTGAGAAAAGTGATGTGTGGCGTGAGAGCGTAAGATATACGTTCAATTGCGTGACTCTCACGCCGAATATGTGAAAGTTGGCAACTCTGGACAcaactgcgctacttgac
>TCONS_00033304
CTGCCTTTAAACTGGAATTGATGTTACTGTGTTTTCAATCACTCCTCTGACTTTTATTTGTCCCTCTATAATccaaaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaggtcaTGCGTCTGCCCTCATTAAAGGtggtttgttttccttttttttcttttccatgaAGATCAGACAGAACCCTCCGGAGCAGTTCTCAGACACCTGCAGAGATCCAACATGGCCTCCTGCACAGTACAGTTTCATTATCGACGGTCCGATCACTGCCGATCGATCGCATCTCCCCACCCACGGAGCTCCATTTTGGTCTGAACAGTTCATAGAGATAATAATTATGAAGCATGACAGCTGGGAATGAGATtagctgtcagtgtgtgtgtgagtgagattgATTTTTATCTAGATTtttacagtttgtgtgtgtgcaagccAAGGTCAAGGGGTGATGACACACACgagcacaaacatacacacacacagAGCAAGACACTGACTCTCACAGctcaaggatggatggatgatctaCACTTAAGAGGTGTTTTCACAAGATCACAAGCAGATGATCCTAAATACAGgtggaCTGTTGCCCAatactcaacccccaacctggaggacaagaacatacacacatataatacagacaatttaacttacccaattcacctatagcacatgactTTCAacatgtgggggaaactagagcaccctaaggaaacccacgccaacacgaggagaaaatgcaaactttaAAGAGAatcaccaactgacccaggcggtgctcgaaccagcgaccttcttgctgtgaggcaacagcactacccactgtgccacccttttCCAATCATATATGCCTTTTTTCTGGGAAACAGAAAACTTACTTTctaaagaaaggaaaaaaatctCTTTGTACTGTTAAAATTAATGGACTTCAGTCTTGTTTAGAACTCtgtgttcttcaaaatatcattttGTGTtccaaagggaaaaaaaagatgcTTAAAAAGACAT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033666 False 3475 lncRNA 0.41 7 46846863 46882199
TCONS_00033667 False 2330 lncRNA 0.45 7 46850693 46882199
TCONS_00033668 False 614 lncRNA 0.41 2 46860829 46865650
TCONS_00033302 False 1192 lncRNA 0.42 3 46865246 46873744
TCONS_00033303 False 1171 lncRNA 0.43 3 46872469 46877103
TCONS_00033304 True 1012 lncRNA 0.42 3 46872469 46881362

Neighbor

gene id symbol gene type direction distance location
XLOC_015869 NA coding upstream 3856 46830234 ~ 46843007 (+)
XLOC_015868 NA coding upstream 32448 46767563 ~ 46814415 (+)
XLOC_015867 ephb1 coding upstream 118836 46589798 ~ 46728027 (+)
XLOC_015866 FQ377603.1 coding upstream 356994 46411079 ~ 46489869 (+)
XLOC_015864 NA coding upstream 529080 46280702 ~ 46317783 (+)
XLOC_015871 NA coding downstream 21009 46903208 ~ 46927052 (+)
XLOC_015872 NA coding downstream 60898 46943097 ~ 47099564 (+)
XLOC_015873 BX248512.1 coding downstream 230497 47112696 ~ 47113654 (+)
XLOC_015874 BX248512.2 coding downstream 266734 47148933 ~ 47149569 (+)
XLOC_015875 si:ch211-284d12.3 coding downstream 366980 47249179 ~ 47249425 (+)
XLOC_015863 NA non-coding upstream 514350 46194327 ~ 46332513 (+)
XLOC_015865 CR356240.1 non-coding upstream 557867 46288860 ~ 46288996 (+)
XLOC_015876 NA non-coding downstream 413790 47295989 ~ 47298098 (+)

Expression


Co-expression Network