XLOC_015871


Basic Information

Item Value
gene id XLOC_015871
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 46903208 ~ 46927052 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033669
CACACTCCCAATCAGCAGGTGGCGGTAATTCACCTAAAAGTTGTATGATAACCACCACGAAAAGACATAAGGAGATGAAGAAGAAGGCAGCAGCCATCTTGTTTTGGAGGGAACCTAGAAGACTGCACTAGCCGTCACAGTAGCATAGGTTACTGTTGTTTAGTTTTGAAGTTTAGTTTGTCCTAGATTATTCTCTAGATTGTCATCTACTTTACCTCATTTAGACCATTTATGGATTACCTGATCCCAAATTGTCAAGGGAACAATGCAAGATTTGATGCCAATAGTCGCACTTCACTGGTGATTAGGGAACAAAGAACGAGTGAACTAAAGGCCATCCTTCAACCATCGTTTGGACTTCTTGACTGAGGATTAATCCTTTCATCTGGTCTTGATTTCAGAGTCAGTTTTATTATCTTCTCGGCTGCCGCATAAAGGAGGATGACAGGAAGTAAAAAGGACTGTTTTATCAAACATTAACGAAGGCGTCTTCCATCACAGAAAGGCTCATCGGCAGAGCTTCATTACT
>TCONS_00033305
GCCATCTTGTTTTGGAGGGAACCTAGAAGACTGCACTAGCCGTCACAGTAGCATAGGTTACTGTTGTTTAGTTTTGAAGTTTAGTTTGTCCTAGATTATTCTCTAGATTGTCATCTACTTTACCTCATTTAGACCATTTATGGATTACCTGATCCCAAATTGTCAAGGGAACAATGCAAGATTTGATGCCAATAGTCGCACTTCACTGGTGATTAGGGAACAAAGAACGAGTGAACTAAAGGCCATCCTTCAACCATCGTTTGGACTTCTTGACTGAGGATTAATCCTTTCATCTGGTCTTGATTTCAGAGTCAGTTTTATTATCTTCTCGGCTGCCGCATAAAGGAGGATGACAGGAAGTAAAAAGGACTGTTTTATCAAACATTAACGAAGGCGTCTTCCATCACAGAAAGGTAATAAAATTGTCCTGTATGGCTGTGTTGACTCTCTAAGCTagttctgatttattttatttttttaaactgacatCTGGCACAGATCCGATCTTGTTGTTTGTTTATGGCAAACTACACAAAtgcatattatatcatattttgaGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033669 False 529 lncRNA 0.41 3 46903208 46927052
TCONS_00033305 True 561 lncRNA 0.38 2 46903300 46906566

Neighbor

gene id symbol gene type direction distance location
XLOC_015870 NA coding upstream 21009 46846863 ~ 46882199 (+)
XLOC_015869 NA coding upstream 60201 46830234 ~ 46843007 (+)
XLOC_015868 NA coding upstream 88793 46767563 ~ 46814415 (+)
XLOC_015867 ephb1 coding upstream 175181 46589798 ~ 46728027 (+)
XLOC_015866 FQ377603.1 coding upstream 413339 46411079 ~ 46489869 (+)
XLOC_015872 NA coding downstream 16045 46943097 ~ 47099564 (+)
XLOC_015873 BX248512.1 coding downstream 185644 47112696 ~ 47113654 (+)
XLOC_015874 BX248512.2 coding downstream 221881 47148933 ~ 47149569 (+)
XLOC_015875 si:ch211-284d12.3 coding downstream 322127 47249179 ~ 47249425 (+)
XLOC_015876 NA coding downstream 368937 47295989 ~ 47298098 (+)
XLOC_015863 NA non-coding upstream 570695 46194327 ~ 46332513 (+)
XLOC_015877 NA non-coding downstream 381157 47308209 ~ 47324379 (+)

Expression


Co-expression Network