XLOC_015877


Basic Information

Item Value
gene id XLOC_015877
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 47308209 ~ 47324379 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033309
TCCACACTAATGATTGCCTTGATAAAAGTTTTCACTTTAACTACAGGTGACAGAAGAATGTATCAGGTTGAAGGGAAgaccatttttaaaaagaatgcgGCACATGAGGAAAGATCATAAAATGCAAAGATGAGTTATGCACTTACTTGTTTTAACCCAAGTTGAGAACATATGTATTTGCATAAAACATAACACAAGGAAATTATGTTTCAGCTGGCATGTGGGCGTGAACCTAATGATGTACTTAAACATCACCCAAAACACAGTTGTACAAATTCAGCTAGACTAAGATGAAGGACACAATTGTATACATCTGGATACTTTTATTTTTGCACGCCCAAAATGGAAGGAACCATGTGTCAGCCCAGTGTTCAGGACCTCCAGTGCTCTGCTGTGCTGGATTGAATAGTACATGCTACCGAGGGTGTTTTTGTGATGAGTACTGCATCATATCCAAGGACTGCTGTCACGACTACAATCAGACATGCAACCAGACAGCAACATCAACTACTCCTTCCGCACAAACCATATTGAATTCAACAACACCACCATCAACAACAGCACCATTATTTCAGTCAAGCTCACCATCATCAACTTTATCATCATCCTCCTCACCATCACCAGACTCTCAATCATCCTTACCTTCAGCATCATCAACCTCCCAATCATATGCATCATCCTCATCGTCATCACCAACCTCCCAATCATATGAATTATCTTCATCTGTAGATAAGAGAATGACATCAGGTCTGCGTGTGTATGTGCGCTCCAGGGCAAATATGGAGGCAACACTAAAGGCTTTGCAAAGTTTTCTCCGTAACATGGAGGCCGTCATGAGGCGAAATAAGGATGAAGACTGCAAGATACGAGTGCTAAAAAACCCCCAGCCATGAAAACATCAACATCACTGACTCTCATCTCCACATCACATAATAGCTGCTCTAGAAGACCTTTCAGAATATTCACTGCAATTGGAAATGTGTTGCCAGTAGGGGGCGCcagaagtttaaaatatgagTATGGAACAGATTTAAAGGCAGAGTTTACCAAAAAATGCAAAAtcactcactatttattcacacTGAAATGGATCCATACCCTTATTAGTCTGAACACAAaggaatattttgaagaaagttgaaaacctgtaaacattgacttccatagtatgaaaaacaaatactatggaactcAATAATTACAGGCTTTTCAAAATTCATCCTGTAAAACCTGTGACAAACAAatcctgtggaaaaaaaaaaaatattattgggttacatagcatttatttttcctaccatggaagtcattggttacatcattttgtgttcagcagaagaaactcacaAGTTTGAAACGAATAAAGACCTAGCA
>TCONS_00033310
atttaCCTTGTGGTGGAAATTAATTTATATACATTACAAagCCCAGTGTTCAGGACCTCCAGTGCTCTGCTGTGCTGGATTGAATAGTACATGCTACCGAGGGTGTTTTTGTGATGAGTACTGCATCATATCCAAGGACTGCTGTCACGACTACAATCAGACATGCAACCAGACAACATCAACTACTCCTTCCGCACAAACCATATTGAATTCAACAACACCACCATCAACAACAGCACCATTATTTCAGTCAAGCTCACCATCATCAACTTTATCATCATCCTCCTCACCATCACCAGACTCTCAATCATCCTTACCTTCAGCATCATCAACCTCCCAATCATATGCATCATCCTCATCGTCATCACCAACCTCCCAATCATATGAATTATCTTCATCTGTAGATAAGAGAATGACATCAGGTCTGCGTGTGTATGTGCGCTCCAGGGCAAATATGGAGGCAACACTAAAGGCTTTGCAAAGTTTTCTCCGTAACATGGAGGCCGTCATGAGGCGAAATAAGGATGAAGACTGCAAGATACGAGTGCTAAAAAACCCCCAGCCATGAAAACATCAACATCACTGACTCTCATCTCCACATCACATAATAGCTGCTCTAGAAGACCTTTCAGAATATTCACTGCAATTGGAAATGTGTTGCCAGTAGGGGGCGCcagaagtttaaaatatgagTATGGAACAGATTTAAAGGCAGAGTTTACCAAAAAATGCAAAAtcactcactatttattcacacTGAAATGGATCCATACCCTTATTAGTCTGAACACAAaggaatattttgaagaaagttgaaaacctgtaaacattgacttccatagtatgaaaaacaaatactatggaactcAATAATTACAGGCTTTTCAAAATTCATCCTGTAAAACCTGTGACAAACAAatcctgtggaaaaaaaaaaaatattattgggttacatagcatttatttttcctaccatggaagtcattggttacatcattttgtgttcagcagaagaaactcacaAGTTTGAAACGAATAAAGACCTAGCA
>TCONS_00031512
ATGGCCCAGGTTTTACAAGGAACACACATCTTTGTGAATGTCTCTTATCTTTCAGCCCAGTGTTCAGGACCTCCAGTGCTCTGCTGTGCTGGATTGAATAGTACATGCTACCGAGGGTGTTTTTGTGATGAGTACTGCATCATATCCAAGGACTGCTGTCACGACTACAATCAGACATGCAACCAGACAGCAACATCAACTACTCCTTCCGCACAAACCATATTGAATTCAACAACACCACCATCAACAACAGCACCATTATTTCAGTCAAGCTCACCATCATCAACTTTATCATCATCCTCCTCACCATCACCAGACTCTCAATCATCCTTACCTTCAGCATCATCAACCTCCCAATCATATGCATCATCCTCATCGTCATCACCAACCTCCCAATCATATGAATTATCTTCATCTGTAGATAAGAGAATGACATCAGGTCTGCGTGTGTATGTGCGCTCCAGGGCAAATATGGAGGCAACACTAAAGGCTTTGCAAAGTTTTCTCCGTAACATGGAGGCCGTCATGAGGCGAAATAAGGATGAAGACTGCAAGATACGAGTGCTAAAAAACCCCCAGCCATGAAAACATCAACATCACTGACTCTCATCTCCACATCACATAATAGCTGCTCTAGAAGACCTTTCAGAATATTCACTGCAATTGGAAATGTGTTGCCAGTAGGGGGCGCcagaagtttaaaatatgagTATGGAACAGATTTAAAGGCAGAGTTTACCAAAAAATGCAAAAtcactcactatttattcacacTGAAATGGATCCATACCCTTATTAGTCTGAACACAAaggaatattttgaagaaagttgaaaacctgtaaacattgacttccatagtatgaaaaacaaatactatggaactcAATAATTACAGGCTTTTCAAAATTCATCCTGTAAAACCTGTGACAAACAAatcctgtggaaaaaaaaaaaatattattgggttacatagcatttatttttcctaccatggaagtcattggttacatcattttgtgttcagcagaagaaactcacaAGTTTGAAACGAATAAAGACCTAGCAAATGATGGtggaatttttgggtgaattctTTAATCTACTTTTGCAAGACCT

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0060047 heart contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005882 intermediate filament cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117370

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033309 False 1374 lncRNA 0.39 4 47308209 47324328
TCONS_00033310 False 1049 lncRNA 0.39 4 47309179 47324328
TCONS_00031512 True 1117 lncRNA 0.39 3 47312577 47324379

Neighbor

gene id symbol gene type direction distance location
XLOC_015876 NA coding upstream 10111 47295989 ~ 47298098 (+)
XLOC_015875 si:ch211-284d12.3 coding upstream 58784 47249179 ~ 47249425 (+)
XLOC_015874 BX248512.2 coding upstream 158640 47148933 ~ 47149569 (+)
XLOC_015873 BX248512.1 coding upstream 194555 47112696 ~ 47113654 (+)
XLOC_015872 NA coding upstream 208645 46943097 ~ 47099564 (+)
XLOC_015878 acsl3b coding downstream 147268 47471647 ~ 47516648 (+)
XLOC_015879 scg2b coding downstream 257618 47581997 ~ 47585197 (+)
XLOC_015880 si:ch211-165b10.3 coding downstream 298823 47623202 ~ 47634015 (+)
XLOC_015881 mbnl1 coding downstream 384474 47708853 ~ 47829287 (+)
XLOC_015882 NA coding downstream 517192 47841571 ~ 47916972 (+)
XLOC_015871 NA non-coding upstream 381157 46903208 ~ 46927052 (+)
XLOC_015887 NA non-coding downstream 649234 47973613 ~ 47976706 (+)
XLOC_015888 NA non-coding downstream 656488 47980867 ~ 47998420 (+)
XLOC_015891 NA non-coding downstream 938651 48263030 ~ 48264841 (+)
XLOC_015892 NA non-coding downstream 951219 48275598 ~ 48276079 (+)

Expression


Co-expression Network