XLOC_015883 (ftr23)


Basic Information

Item Value
gene id XLOC_015883
gene name ftr23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 47905735 ~ 47911747 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031528
tttgtctttttaaaaatttatttggcTAGATCCTTCCAGAAACAGTTTACAATGTTGCATTCAAAAACTAAATGGCAAATGCTCTCTTTATCTGCATTGCAGAAACCACAGATATCCTCCATTTTAATGTTCTTTGATAAAAACTATTTTGCTGGGTAAATTGTGtgcagtattttaaaatgaatttccttgattttattattagtagtgtaTTTGAAGGCAGTTAACCGGGCTCTTTTCCAGTTAATATTAACTATAACAGAGTTCCAGAAAAAAATTGCCTCTTGGAGTAGTTTTATTTTGCTTATGAAAAATATTAAGCAAATAATTGTTAGAAAATTTTTATAAGTCAACTCAACACCTTCTAAATGTAATTTTGGGTTTACAATGATTATGATTTTAacaatttgaatatttttacaggGATAGATAAAAAACTGGTTTTCGCGTTACTTACAACATTATGACGCCTACATCCGAGTTCATCACTGACGGACGGAAGTTTACAATGGTCAGGATTGTGTGCAGTTTTAAAGCGTGACGCACGCCAGtGAAATGGCAGAAAGCAGTATTTCAGTGGCTGAGGATCAGTTCAGTTGTTCAGTCTGTCTGGATCTTCTGAAGGAGCCAGTGACCATCCCCTGTGGACACAGTTACTGTATGAACTGCATTACTGACTGCTGGAATCAAGATGAGCAGAGGAGAGTTTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAAACAAGAACGTGGTGATGGCAGAAATGGTGGAGAAACTGAAGACAGGATCAAGAAATGCTGCAAGTTATGCTGGACCTGGAGATGTGGAGTGTGATGTTTGCACAGGAAGGAAGCGCAAAGCTGTTAAATCCTGTCTGATGTGTCTGAACTCTTACTGTCAAACTCACCTTGAACAACACGATAGCTTCTTTAAAGATAAGAGACATCATTTAATCAATGCCACTGGACGACTGAGGCAGATGATCTGCTCTAAACATGACCGACTGCTGGAGGTTTACTGTCACACAGACCAAAAGTGCATTTGTTTACTGTGTATGATGGATGAACACACAGGTCATCAAACTGTTTCAATTAAAACAGAGAGGGCTGAGAAACAAAAACTGTTGTTGGACTTACAGAGAAACTTCCAGAAGACAATCCAGGAGAGAGAGGAGGAGGTTTGGGAGCTGAAACATGCCGTGAAGACTCATAAGCACTCTGCACAGACAGCAGTGGAGGAAAGTGAGAGGATCTTCACTAGACTATTCCACTTTATTGAGAGAAGACGATCTGAGGTCTCGCAGATGATCAGAGATCGAGAAAAGACTGAAGTGAGTCGAGCTGAAGGACTCTTGAAGAAACTGGAGCAGGAGATTGAAGATCTGAAGAGGAGAAACACTGAGCTGGAGCAGCTTTCACACACTGATGATCACATACATTTCCTACAGAGTTTCCAGTCTCTCTCTGCTCCTCCTGAATCTCCAGAAAGCAGTGATGTTACTTCTCTCCTCTTTTATGATGACGTGGGTGAAACTCTCTCTGTCCTGAAAGAGAAACTTGAGGACGCCTGCAAGGAAGCCACAGAAAATATGTCTGTTTTAGAGACACCATACATGGAGATCATTTCCACCTCTGAACTCATTAACAGAGACAAGTTCTTGCAATATTTCCATCATCTCACCCTGGATtcaaacacagcacataaatatCTCCGTCTGTCTGAAGGAAACAGAGTGGCTACTTTTATTGGAGCTGACCAGAGTTACCCGGCTCACCCGGACAGATTTCATGACTTTTcccaggtgttgtgcagagagagtgtatGTGGACGCTGTTATTGGGAGGTGGAGTGGAGCGGGGAGGCTGGAGTGGGAATATCAGTCTCGTATAAGAGCATCAGAAGAAAAGGAGAAGGTTTCGACTGTGTGTTTGGGTTTAATGATCAATCCTGGAGATTGTCCTGCTCTAACTCCAGGTATACACTCAGACACAAACAGATATCCACCAAACTCTGTGTACCATCAAGCTCCAACAGAATAGGAGTGTATGTGGATCACAAAGCAGGAATTCTGTCCTTCTTTAACATCTCTGACACAATGAGCCCcatccacagagtccagaccacattcactcaGCCACTCTATCCTGGGTTTGGGATTAATTTTGGGTCAACTGTGAAACTGAAGTCTGCAGAGAATCTGTGAATGACAGTGTCATCTTACAAGTTTAAGCATTTTAAGAGAAAGGGCTGAGTACATGTGGTTAGCAGTAGTCAGTGACAGTTGACTGGTATTTTTAATCAAGATTGTGTGTCTTTAAGATTTTCTTACATTAAGGACATTCAttacctgacaaaggtcttgcCTATCCAGGTTTTGGTATTAAAAGTGgcatatatgaaaggcaaagtcctctagattgtgcttattttaccagaataaaacatgatcatgccttgatttttagttatttaattaggacagtaaggtctgactttgctaagacaaaagtcttgtcacttaacagaaataatgtacagtatagaatataaagtcatgctgcagtggaaaaataatgaatattatgtatgactcccatgagcttggaggactgcatccagacatctctgcaatgactcaaataccTTATTttatgaagtcatctggaatggcaaataaagcgttcttgcaggacacCCAAAGTATAtcaggattctttggatttatcttcaatgcctcctccatcttaccccaggcatgctcaataatgttcatacctggtgactaggctggccaatccttgagctccttgacctactttgctttcaggaactttgatgtggaggctgaagtatgggaAGTAGTGCTATcgtgctgaagaatttgccctctcctgtggtttgtaatgtaatgggcagcacaaatgtcttgatagctcaggctgttgatgttgccatccactctgcagatctcttgcacacccccatactaaatgtaaccccaaaccctgatttttcctttaccaaacttgggtccatgcaggtccaataggtcttcttcagtatttgtgatgattgggacgctgttcagcagatgattcttcagaaaaatcaaccctctgccacttttccaaatgatcaatcaagttaataataataagacaagaCTACAAGACCATTGTTATGTATTTTGCTCACCCGTGTACCCTAAAGTCAGCTTGAAATTAAATTTTActcatattatttttatatgtatatagtagtgCTTCTTATAAATGATGTATCGGTGCACTTAGTTCTAGTGTAAAAATTCATTTGCCCTCATAACTTTTATTAAATACTGTAACCTTCCCTCTTCGTTGGAATGACTTTTCTTTATTTCAGGTCACAA
>TCONS_00031529
ACAATGGTCAGGATTGTGTGCAGTTTTAAAGCGTGACGCACGCCAGtGAAATGGCAGAAAGCAGTATTTCAGTGGCTGAGGATCAGTTCAGTTGTTCAGTCTGTCTGGATCTTCTGAAGGAGCCAGTGACCATCCCCTGTGGACACAGTTACTGTATGAACTGCATTACTGACTGCTGGAATCAAGATGAGCAGAGGAGAGTTTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAAACAAGAACGTGGTGATGGCAGAAATGGTGGAGAAACTGAAGACAGGATCAAGAAATGCTGCAAGTTATGCTGGACCTGGAGATGTGGAGTGTGATGTTTGCACAGGAAGGAAGCGCAAAGCTGTTAAATCCTGTCTGATGTGTCTGAACTCTTACTGTCAAACTCACCTTGAACAACACGATAGCTTCTTTAAAGATAAGAGACATCATTTAATCAATGCCACTGGACGACTGAGGCAGATGATCTGCTCTAAACATGACCGACTGCTGGAGGTTTACTGTCACACAGACCAAAAGTGCATTTGTTTACTGTGTATGATGGATGAACACACAGGTCATCAAACTGTTTCAATTAAAACAGAGAGGGCTGAGAAACAAAAACTGTTGTTGGACTTACAGAGAAACTTCCAGAAGACAATCCAGGAGAGAGAGGAGGAGGTTTGGGAGCTGAAACATGCCGTGAAGACTCATAAGCACTCTGCACAGACAGCAGTGGAGGAAAGTGAGAGGATCTTCACTAGACTATTCCACTTTATTGAGAGAAGACGATCTGAGGTCTCGCAGATGATCAGAGATCGAGAAAAGACTGAAGTGAGTCGAGCTGAAGGACTCTTGAAGAAACTGGAGCAGGAGATTGAAGATCTGAAGAGGAGAAACACTGAGCTGGAGCAGCTTTCACACACTGATGATCACATACATTTCCTACAGAGTTTCCAGTCTCTCTCTGCTCCTCCTGAATCTCCAGAAAGCAGTGATGTTACTTCTCTCCTCTTTTATGATGACGTGGGTGAAACTCTCTCTGTCCTGAAAGAGAAACTTGAGGACGCCTGCAAGGAAGCCACAGAAAATATGTCTGGTAAAGCAATGGAGAATT

Function

symbol description
ftr23 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-322 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDARG00000067985

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031528 False 3405 mRNA 0.40 7 47905735 47911747
TCONS_00031529 True 1125 mRNA 0.45 5 47906240 47909685

Neighbor

gene id symbol gene type direction distance location
XLOC_015881 mbnl1 coding upstream 76448 47708853 ~ 47829287 (+)
XLOC_015880 si:ch211-165b10.3 coding upstream 271720 47623202 ~ 47634015 (+)
XLOC_015879 scg2b coding upstream 320538 47581997 ~ 47585197 (+)
XLOC_015878 acsl3b coding upstream 389087 47471647 ~ 47516648 (+)
XLOC_015877 NA coding upstream 581356 47308209 ~ 47324379 (+)
XLOC_015884 ftr25 coding downstream 15279 47927026 ~ 47929283 (+)
XLOC_015885 ftr26 coding downstream 23729 47935476 ~ 47943492 (+)
XLOC_015886 ftr19 coding downstream 33220 47944967 ~ 47951567 (+)
XLOC_015887 NA coding downstream 61866 47973613 ~ 47976706 (+)
XLOC_015888 NA coding downstream 69120 47980867 ~ 47998420 (+)
XLOC_015876 NA non-coding upstream 607637 47295989 ~ 47298098 (+)
XLOC_015874 BX248512.2 non-coding upstream 756166 47148933 ~ 47149569 (+)
XLOC_015873 BX248512.1 non-coding upstream 792081 47112696 ~ 47113654 (+)
XLOC_015872 NA non-coding upstream 806171 46943097 ~ 47099564 (+)
XLOC_015891 NA non-coding downstream 351283 48263030 ~ 48264841 (+)
XLOC_015892 NA non-coding downstream 363851 48275598 ~ 48276079 (+)
XLOC_015895 NA non-coding downstream 385305 48297052 ~ 48297450 (+)

Expression


Co-expression Network